diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
index 68bf23c9..8266c503 100644
--- a/docs/CODE_OF_CONDUCT.html
+++ b/docs/CODE_OF_CONDUCT.html
@@ -207,7 +207,7 @@ <h2 class="hasAnchor">
 <div id="attribution" class="section level2">
 <h2 class="hasAnchor">
 <a href="#attribution" class="anchor"></a>Attribution</h2>
-<p>This Code of Conduct is adapted from the <a href="http://contributor-covenant.org">Contributor Covenant</a>, version 1.4, available at <a href="http://contributor-covenant.org/version/1/4/">http://contributor-covenant.org/version/1/4</a></p>
+<p>This Code of Conduct is adapted from the <a href="https://contributor-covenant.org">Contributor Covenant</a>, version 1.4, available at <a href="https://contributor-covenant.org/version/1/4/">https://contributor-covenant.org/version/1/4</a></p>
 </div>
 </div>
 
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
index f14a9947..4935cda8 100644
--- a/docs/CONTRIBUTING.html
+++ b/docs/CONTRIBUTING.html
@@ -192,7 +192,7 @@ <h2 class="hasAnchor">
 <li>
 <p>Make the changes to the code on your fork.</p>
 <ul>
-<li>Use the tidyverse <a href="http://style.tidyverse.org/">coding style</a>.</li>
+<li>Use the tidyverse <a href="https://style.tidyverse.org/">coding style</a>.</li>
 <li>Any new function should have <a href="http://r-pkgs.had.co.nz/man.html">Roxygen</a> documentation. Internal functions should contain <code>#' @keywords internal</code>. Add examples to new functions. Make sure to update the documentation with <code><a href="https://www.rdocumentation.org/packages/devtools/topics/document">devtools::document()</a></code> before submitting the pull request.</li>
 <li>
 <a href="http://r-pkgs.had.co.nz/tests.html">Tests</a> should be added under <em>tests/testthat/</em> to ensure for proper code coverage.</li>
diff --git a/docs/articles/about.html b/docs/articles/about.html
index 1ae903e3..1c4fef77 100644
--- a/docs/articles/about.html
+++ b/docs/articles/about.html
@@ -125,7 +125,7 @@
       <h1>About xpose</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/about.Rmd"><code>vignettes/about.Rmd</code></a></small>
       <div class="hidden name"><code>about.Rmd</code></div>
@@ -207,16 +207,16 @@ <h1 class="hasAnchor">
 <p>The xpose package development was kindly sponsored by:</p>
 <ul>
 <li>
-<a href="http://pharmetheus.com">Pharmetheus</a> (2017)</li>
+<a href="https://pharmetheus.com">Pharmetheus</a> (2017)</li>
 <li>
-<a href="http://www.pfizer.com">Pfizer</a> (2017)</li>
+<a href="https://www.pfizer.com">Pfizer</a> (2017)</li>
 </ul>
 </div>
 <div id="history" class="section level1">
 <h1 class="hasAnchor">
 <a href="#history" class="anchor"></a>History</h1>
 <p>The new xpose was inspired from data visualization and model diagnostics concepts established by the <a href="http://xpose.sourceforge.net">xpose4</a> package.</p>
-<p>Xpose4 was developed by the <a href="http://www.farmbio.uu.se/forskning/researchgroups/pharmacometrics/">Department of Pharmaceutical Biosciences</a> at Uppsala University:</p>
+<p>Xpose4 was developed by the <a href="https://www.farmbio.uu.se/forskning/researchgroups/pharmacometrics/">Department of Pharmaceutical Biosciences</a> at Uppsala University:</p>
 <ul>
 <li>Copyright (C) 2009-present Andrew C. Hooker, Mats O. Karlsson and E. Niclas Jonsson.</li>
 <li>Copyright (C) 2005-2008 Andrew C. Hooker, Justin J. Wilkins, Mats O. Karlsson and E. Niclas Jonsson.</li>
diff --git a/docs/articles/access_xpdb_data.html b/docs/articles/access_xpdb_data.html
index 808ac3ad..bd439a65 100644
--- a/docs/articles/access_xpdb_data.html
+++ b/docs/articles/access_xpdb_data.html
@@ -125,7 +125,7 @@
       <h1>Access the xpdb data</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/access_xpdb_data.Rmd"><code>vignettes/access_xpdb_data.Rmd</code></a></small>
       <div class="hidden name"><code>access_xpdb_data.Rmd</code></div>
diff --git a/docs/articles/bestiarium.html b/docs/articles/bestiarium.html
index 46d57669..9eb05215 100644
--- a/docs/articles/bestiarium.html
+++ b/docs/articles/bestiarium.html
@@ -125,7 +125,7 @@
       <h1>The xpose plots</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/bestiarium.Rmd"><code>vignettes/bestiarium.Rmd</code></a></small>
       <div class="hidden name"><code>bestiarium.Rmd</code></div>
diff --git a/docs/articles/customize_plots.html b/docs/articles/customize_plots.html
index 9067b83a..63a9dffb 100644
--- a/docs/articles/customize_plots.html
+++ b/docs/articles/customize_plots.html
@@ -125,7 +125,7 @@
       <h1>Customize plots</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/customize_plots.Rmd"><code>vignettes/customize_plots.Rmd</code></a></small>
       <div class="hidden name"><code>customize_plots.Rmd</code></div>
diff --git a/docs/articles/faq.html b/docs/articles/faq.html
index 43a89e12..294e033e 100644
--- a/docs/articles/faq.html
+++ b/docs/articles/faq.html
@@ -125,7 +125,7 @@
       <h1>Frequently Asked Questions</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/faq.Rmd"><code>vignettes/faq.Rmd</code></a></small>
       <div class="hidden name"><code>faq.Rmd</code></div>
diff --git a/docs/articles/import_model_outputs.html b/docs/articles/import_model_outputs.html
index 4a491e0b..b035fd78 100644
--- a/docs/articles/import_model_outputs.html
+++ b/docs/articles/import_model_outputs.html
@@ -125,7 +125,7 @@
       <h1>Import model outputs</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/import_model_outputs.Rmd"><code>vignettes/import_model_outputs.Rmd</code></a></small>
       <div class="hidden name"><code>import_model_outputs.Rmd</code></div>
@@ -182,7 +182,7 @@ <h5 class="hasAnchor">
 <div id="compressed-tables" class="section level5">
 <h5 class="hasAnchor">
 <a href="#compressed-tables" class="anchor"></a>Compressed tables</h5>
-<p>xpose makes use of the <a href="http://readr.tidyverse.org">readr</a> which offers the advantages of 1) rapidly import big tables and 2) automatically import compressed table (e.g. sdtab001.zip) to increase storage capacity.</p>
+<p>xpose makes use of the <a href="https://readr.tidyverse.org">readr</a> which offers the advantages of 1) rapidly import big tables and 2) automatically import compressed table (e.g. sdtab001.zip) to increase storage capacity.</p>
 </div>
 </div>
 <div id="others-nlme-tools" class="section level4">
diff --git a/docs/articles/interactive_plots.html b/docs/articles/interactive_plots.html
index 8423c638..3d8ef63f 100644
--- a/docs/articles/interactive_plots.html
+++ b/docs/articles/interactive_plots.html
@@ -127,7 +127,7 @@
       <h1>Creating interactive plots</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/interactive_plots.Rmd"><code>vignettes/interactive_plots.Rmd</code></a></small>
       <div class="hidden name"><code>interactive_plots.Rmd</code></div>
@@ -171,8 +171,8 @@ <h3 class="hasAnchor">
 <a href="#convert-the-plot-from-ggplot2-to-plotly" class="anchor"></a>Convert the plot from ggplot2 to plotly</h3>
 <p>The ggplot2 object is now automatically converted to a plotly graph. The scales can now be changed interactively, groups can be hidden by clicking on the legend</p>
 <div class="sourceCode" id="cb6"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb6-1" data-line-number="1">plotly<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/plotly/topics/ggplotly">ggplotly</a></span>(gof_plot)</a></code></pre></div>
-<div id="htmlwidget-a9904c3317119c5d7ba9" style="width:100%;height:480px;" class="plotly html-widget"></div>
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 <div id="other-examples" class="section level3">
 <h3 class="hasAnchor">
@@ -183,8 +183,8 @@ <h4 class="hasAnchor">
 <div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1">xpdb_ex_pk <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb7-2" data-line-number="2"><span class="st">  </span><span class="kw"><a href="../reference/distrib_plot.html">eta_distrib</a></span>(<span class="dt">title =</span> <span class="st">'Eta distribution'</span>) <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb7-3" data-line-number="3"><span class="st">  </span>plotly<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/plotly/topics/ggplotly">ggplotly</a></span>()</a></code></pre></div>
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 <div id="vpc" class="section level4">
 <h4 class="hasAnchor">
@@ -193,8 +193,8 @@ <h4 class="hasAnchor">
 <a class="sourceLine" id="cb8-2" data-line-number="2"><span class="st">  </span><span class="kw"><a href="../reference/vpc_data.html">vpc_data</a></span>() <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb8-3" data-line-number="3"><span class="st">  </span><span class="kw"><a href="../reference/vpc.html">vpc</a></span>(<span class="dt">title =</span> <span class="st">'Visual predictive checks'</span>, <span class="dt">type =</span> <span class="st">'alpr'</span>) <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb8-4" data-line-number="4"><span class="st">  </span>plotly<span class="op">::</span><span class="kw"><a href="https://www.rdocumentation.org/packages/plotly/topics/ggplotly">ggplotly</a></span>()</a></code></pre></div>
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diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html
index 5e3ff9c8..ee633bb8 100644
--- a/docs/articles/introduction.html
+++ b/docs/articles/introduction.html
@@ -125,7 +125,7 @@
       <h1>Introduction</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/introduction.Rmd"><code>vignettes/introduction.Rmd</code></a></small>
       <div class="hidden name"><code>introduction.Rmd</code></div>
@@ -262,7 +262,7 @@ <h3 class="hasAnchor">
 <div id="pipes" class="section level3">
 <h3 class="hasAnchor">
 <a href="#pipes" class="anchor"></a>Pipes</h3>
-<p><code>xpose</code> makes use of the pipe operator <code>%&gt;%</code> from the package <a href="http://dplyr.tidyverse.org">dplyr</a>. Pipes can be used to generate clear workflow.</p>
+<p><code>xpose</code> makes use of the pipe operator <code>%&gt;%</code> from the package <a href="https://dplyr.tidyverse.org">dplyr</a>. Pipes can be used to generate clear workflow.</p>
 <div class="sourceCode" id="cb11"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb11-1" data-line-number="1"><span class="kw"><a href="../reference/xpose_data.html">xpose_data</a></span>(<span class="dt">runno =</span> <span class="st">'001'</span>) <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb11-2" data-line-number="2"><span class="st">  </span><span class="kw"><a href="../reference/dv_vs_pred.html">dv_vs_ipred</a></span>() <span class="op">%&gt;%</span><span class="st"> </span></a>
 <a class="sourceLine" id="cb11-3" data-line-number="3"><span class="st">  </span><span class="kw"><a href="../reference/xpose_save.html">xpose_save</a></span>(<span class="dt">file =</span> <span class="st">'run001_dv_vs_ipred.pdf'</span>)</a></code></pre></div>
diff --git a/docs/articles/multiple_pages.html b/docs/articles/multiple_pages.html
index 572ccd57..dabc46e9 100644
--- a/docs/articles/multiple_pages.html
+++ b/docs/articles/multiple_pages.html
@@ -125,7 +125,7 @@
       <h1>Plots with multiple pages</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/multiple_pages.Rmd"><code>vignettes/multiple_pages.Rmd</code></a></small>
       <div class="hidden name"><code>multiple_pages.Rmd</code></div>
diff --git a/docs/articles/vpc.html b/docs/articles/vpc.html
index dd49d178..7f2c0c53 100644
--- a/docs/articles/vpc.html
+++ b/docs/articles/vpc.html
@@ -125,7 +125,7 @@
       <h1>Visual Predictive Checks (VPC)</h1>
                         <h4 class="author">Benjamin Guiastrennec</h4>
             
-            <h4 class="date">18 March, 2019</h4>
+            <h4 class="date">19 March, 2019</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/UUPharmacometrics/xpose/blob/master/vignettes/vpc.Rmd"><code>vignettes/vpc.Rmd</code></a></small>
       <div class="hidden name"><code>vpc.Rmd</code></div>
diff --git a/docs/index.html b/docs/index.html
index b5b13abd..7ac05ce4 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -265,7 +265,7 @@ <h2 class="hasAnchor">
 <p>The <a href="https://UUPharmacometrics.github.io/xpose/">xpose website</a> contains several useful articles to make full use of xpose</p>
 <p>When working with xpose, a working knowledge of ggplot2 is recommended. Help for ggplot2 can be found in:</p>
 <ul>
-<li>The ggplot2 <a href="http://docs.ggplot2.org/current/">documentation</a>
+<li>The ggplot2 <a href="https://docs.ggplot2.org/current/">documentation</a>
 </li>
 <li>The ggplot2 <a href="https://groups.google.com/forum/?fromgroups#!forum/ggplot2">mailing list</a>
 </li>
@@ -318,7 +318,7 @@ <h2>Dev status</h2>
 <ul class="list-unstyled">
 <li><a href="https://travis-ci.org/UUPharmacometrics/xpose"><img src="https://travis-ci.org/UUPharmacometrics/xpose.svg?branch=master" alt="travis_status"></a></li>
 <li><a href="https://ci.appveyor.com/project/guiastrennec/xpose"><img src="https://ci.appveyor.com/api/projects/status/f6k09rf2cfi3vcs2?svg=true" alt="appveyor status"></a></li>
-<li><a href="https://CRAN.R-project.org/package=xpose"><img src="http://www.r-pkg.org/badges/version/xpose" alt="cran_version"></a></li>
+<li><a href="https://CRAN.R-project.org/package=xpose"><img src="https://www.r-pkg.org/badges/version/xpose" alt="cran_version"></a></li>
 <li><a href="https://codecov.io/gh/UUPharmacometrics/xpose"><img src="https://codecov.io/gh/UUPharmacometrics/xpose/branch/master/graph/badge.svg" alt="codecov"></a></li>
 <li><a href="https://www.tidyverse.org/lifecycle/"><img src="https://img.shields.io/badge/lifecycle-maturing-blue.svg" alt="Lifecycle Status"></a></li>
 <li><a href="https://CRAN.R-project.org/package=xpose"><img src="https://cranlogs.r-pkg.org/badges/grand-total/xpose" alt="downloads"></a></li>
diff --git a/docs/news/index.html b/docs/news/index.html
index 5aa88f2b..4dc09d53 100644
--- a/docs/news/index.html
+++ b/docs/news/index.html
@@ -416,11 +416,11 @@ <h3 class="hasAnchor">
 <h3 class="hasAnchor">
 <a href="#definition-of-core-functions-and-workflow" class="anchor"></a>Definition of core functions and workflow</h3>
 <ul>
-<li>Defined the <code>xpose_geom()</code> core function to specifically direct arguments to <a href="http://ggplot2.tidyverse.org"><code>ggplot2</code></a> layers</li>
+<li>Defined the <code>xpose_geom()</code> core function to specifically direct arguments to <a href="https://ggplot2.tidyverse.org"><code>ggplot2</code></a> layers</li>
 <li>Defined the concept of template titles</li>
 <li>Define the templates for <code>xpose_theme()</code>
 </li>
-<li>Makes use of the <a href="http://tidyverse.org"><code>tidyverse</code></a> and pipes <code>%&gt;%</code>
+<li>Makes use of the <a href="https://tidyverse.org"><code>tidyverse</code></a> and pipes <code>%&gt;%</code>
 </li>
 </ul>
 </div>
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