From 88187f44092fc81c2292650745e2964c25b6695a Mon Sep 17 00:00:00 2001 From: guiastrennec Date: Mon, 29 Jan 2024 20:30:33 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20UUPharma?= =?UTF-8?q?cometrics/xpose@bf02df3365b5df8fabbf5859bc9039afb78c69fd=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/about.html | 2 +- articles/access_xpdb_data.html | 2 +- articles/customize_plots.html | 2 +- articles/faq.html | 2 +- articles/import_model_outputs.html | 2 +- articles/interactive_plots.html | 14 +++++++------- articles/introduction.html | 2 +- articles/multiple_pages.html | 2 +- articles/plot_list.html | 2 +- articles/vpc.html | 2 +- pkgdown.yml | 2 +- reference/read_nm_model.html | 8 ++++---- reference/xpose_data.html | 22 ++++++++++++++++++---- 13 files changed, 39 insertions(+), 25 deletions(-) diff --git a/articles/about.html b/articles/about.html index 91571be9..dc5f5d42 100644 --- a/articles/about.html +++ b/articles/about.html @@ -132,7 +132,7 @@

About xpose

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/about.Rmd diff --git a/articles/access_xpdb_data.html b/articles/access_xpdb_data.html index ef22d8e4..dbf26a23 100644 --- a/articles/access_xpdb_data.html +++ b/articles/access_xpdb_data.html @@ -132,7 +132,7 @@

Access the xpdb data

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/access_xpdb_data.Rmd diff --git a/articles/customize_plots.html b/articles/customize_plots.html index 733dd219..77ea4edf 100644 --- a/articles/customize_plots.html +++ b/articles/customize_plots.html @@ -132,7 +132,7 @@

Customize plots

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/customize_plots.Rmd diff --git a/articles/faq.html b/articles/faq.html index 7b90f333..9a1b76f8 100644 --- a/articles/faq.html +++ b/articles/faq.html @@ -132,7 +132,7 @@

Frequently Asked Questions

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/faq.Rmd diff --git a/articles/import_model_outputs.html b/articles/import_model_outputs.html index fe25c392..ede2c639 100644 --- a/articles/import_model_outputs.html +++ b/articles/import_model_outputs.html @@ -132,7 +132,7 @@

Import model outputs

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/import_model_outputs.Rmd diff --git a/articles/interactive_plots.html b/articles/interactive_plots.html index 3058e041..bf262847 100644 --- a/articles/interactive_plots.html +++ b/articles/interactive_plots.html @@ -134,7 +134,7 @@

Creating interactive plots

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/interactive_plots.Rmd @@ -185,8 +185,8 @@

Convert the plot from ggplot2 t clicking on the legend

 plotly::ggplotly(gof_plot)
-
- +
+

Other examples @@ -198,8 +198,8 @@

A distributionxpdb_ex_pk %>% eta_distrib(title = 'Eta distribution') %>% plotly::ggplotly()

-
- +
+

VPC @@ -209,8 +209,8 @@

VPC vpc_data() %>% vpc(title = 'Visual predictive checks', type = 'alpr') %>% plotly::ggplotly()

-
- +
+ diff --git a/articles/introduction.html b/articles/introduction.html index ac9ae944..3d03326a 100644 --- a/articles/introduction.html +++ b/articles/introduction.html @@ -132,7 +132,7 @@

Introduction

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/introduction.Rmd diff --git a/articles/multiple_pages.html b/articles/multiple_pages.html index a4a1a0e6..02a67ef7 100644 --- a/articles/multiple_pages.html +++ b/articles/multiple_pages.html @@ -132,7 +132,7 @@

Plots with multiple pages

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/multiple_pages.Rmd diff --git a/articles/plot_list.html b/articles/plot_list.html index 4689d4dd..87d46e8c 100644 --- a/articles/plot_list.html +++ b/articles/plot_list.html @@ -132,7 +132,7 @@

The xpose plots

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/plot_list.Rmd diff --git a/articles/vpc.html b/articles/vpc.html index a7f3b20a..17d4705f 100644 --- a/articles/vpc.html +++ b/articles/vpc.html @@ -132,7 +132,7 @@

Visual Predictive Checks (VPC)

Benjamin Guiastrennec

-

28 January, 2024

+

29 January, 2024

Source: vignettes/vpc.Rmd diff --git a/pkgdown.yml b/pkgdown.yml index 4ab52f34..0860d5ea 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -12,7 +12,7 @@ articles: multiple_pages: multiple_pages.html plot_list: plot_list.html vpc: vpc.html -last_built: 2024-01-28T23:18Z +last_built: 2024-01-29T20:28Z urls: reference: https://uupharmacometrics.github.io/xpose/reference article: https://uupharmacometrics.github.io/xpose/articles diff --git a/reference/read_nm_model.html b/reference/read_nm_model.html index e3298563..be04dcf9 100644 --- a/reference/read_nm_model.html +++ b/reference/read_nm_model.html @@ -143,10 +143,10 @@

Arguments

check_ext

Logical, if TRUE will provide an error message if the extension of the NONMEM input file is not one of '.lst', '.out', '.res', -'.mod' or '.ctl' for NONMEM. If {FALSE

-

any file extension can be -used.

- +'.mod' or '.ctl' for NONMEM. If FALSE any file extension can be +used.

+ +

Value

diff --git a/reference/xpose_data.html b/reference/xpose_data.html index a0085771..ede4e464 100644 --- a/reference/xpose_data.html +++ b/reference/xpose_data.html @@ -180,10 +180,24 @@

Arguments

check_ext

Logical, if TRUE will provide an error message if the extension of the NONMEM input file is not one of '.lst', '.out', '.res', -'.mod' or '.ctl' for NONMEM. If {FALSE

-

any file extension can be -used.

-
+'.mod' or '.ctl' for NONMEM. If FALSE any file extension can be +used.

+ + +
extra_files
+

A vector of additional output file extensions to be +imported. Default is '.ext', '.cov', '.cor', '.phi', '.grd' for NONMEM.

+ + +
quiet
+

Logical, if FALSE messages are printed to the console.

+ + +
...
+

Additional arguments to be passed to the +read_nm_tables functions.

+ +

File path generation

The rules for model file names generation are