From bb6739ac42edb5ac28975b4cbd32efa3bfa91395 Mon Sep 17 00:00:00 2001 From: guiastrennec Date: Fri, 4 Oct 2019 01:40:46 +0200 Subject: [PATCH] website: updated --- docs/404.html | 10 +- docs/CODE_OF_CONDUCT.html | 10 +- docs/CONTRIBUTING.html | 10 +- docs/LICENSE-text.html | 10 +- docs/articles/about.html | 7 +- docs/articles/access_xpdb_data.html | 7 +- docs/articles/customize_plots.html | 9 +- docs/articles/faq.html | 9 +- docs/articles/import_model_outputs.html | 7 +- docs/articles/index.html | 10 +- docs/articles/interactive_plots.html | 19 +- docs/articles/introduction.html | 9 +- docs/articles/multiple_pages.html | 7 +- docs/articles/plot_list.html | 7 +- docs/articles/vpc.html | 7 +- docs/authors.html | 10 +- docs/index.html | 49 ++-- docs/news/index.html | 15 +- docs/pkgdown.css | 10 +- docs/pkgdown.js | 5 + docs/pkgdown.yml | 4 +- docs/reference/add_facet_var.html | 21 +- docs/reference/aes_c.html | 21 +- docs/reference/aes_filter.html | 21 +- docs/reference/aes_rename.html | 21 +- docs/reference/all_data_problem.html | 21 +- docs/reference/all_file_problem.html | 21 +- docs/reference/amt_vs_idv.html | 36 ++- docs/reference/append_suffix.html | 21 +- docs/reference/as.ctime.html | 21 +- docs/reference/as.nm.table.list.html | 21 +- docs/reference/as.xpdb.html | 21 +- docs/reference/as.xpose.plot.html | 21 +- docs/reference/as.xpose.theme.html | 21 +- docs/reference/check_plot_type.html | 21 +- docs/reference/check_problem.html | 19 +- docs/reference/check_quo_vars.html | 21 +- docs/reference/check_scales.html | 21 +- docs/reference/check_xpdb.html | 21 +- docs/reference/combine_tables.html | 21 +- docs/reference/data_opt.html | 20 +- docs/reference/default_plot_problem.html | 21 +- docs/reference/distrib_plot.html | 36 ++- docs/reference/drop_fixed_cols.html | 21 +- docs/reference/dv_vs_pred.html | 36 ++- docs/reference/edit_xpose_data.html | 19 +- docs/reference/fetch_data.html | 21 +- docs/reference/file_path.html | 21 +- docs/reference/filter_xp_theme.html | 21 +- docs/reference/get_code.html | 22 +- docs/reference/get_data.html | 22 +- docs/reference/get_extension.html | 21 +- docs/reference/get_file.html | 22 +- docs/reference/get_prm.html | 22 +- .../get_prm_transformation_formulas.html | 21 +- docs/reference/get_special.html | 22 +- docs/reference/get_summary.html | 22 +- docs/reference/gg_themes.html | 20 +- docs/reference/grab_iter.html | 19 +- docs/reference/ind_plots.html | 36 ++- docs/reference/index.html | 10 +- docs/reference/index_table.html | 21 +- docs/reference/irep.html | 18 +- docs/reference/is.formula.html | 21 +- docs/reference/is.nm.model.html | 21 +- docs/reference/is.nm.table.list.html | 21 +- docs/reference/is.xpdb.html | 21 +- docs/reference/is.xpose.plot.html | 21 +- docs/reference/is.xpose.theme.html | 21 +- docs/reference/last_data_problem.html | 21 +- docs/reference/last_file_method.html | 21 +- docs/reference/last_file_problem.html | 21 +- docs/reference/last_file_subprob.html | 21 +- docs/reference/list_nm_tables.html | 25 +-- docs/reference/list_nm_tables_manual.html | 21 +- docs/reference/list_vars.html | 20 +- docs/reference/list_xpdb.html | 26 +-- docs/reference/make_extension.html | 21 +- docs/reference/manual_nm_import.html | 26 +-- docs/reference/merge_firstonly.html | 21 +- docs/reference/minimization_plots.html | 36 ++- docs/reference/modify_xpdb.html | 18 +- docs/reference/msg.html | 21 +- docs/reference/only_distinct.html | 21 +- docs/reference/only_obs.html | 21 +- docs/reference/parse_arg.html | 21 +- docs/reference/parse_nm_files.html | 21 +- docs/reference/parse_title.html | 21 +- docs/reference/pred_vs_idv.html | 36 ++- docs/reference/print.xpose_data.html | 18 +- docs/reference/print.xpose_plot.html | 18 +- docs/reference/prm_table.html | 20 +- docs/reference/qq_plot.html | 36 ++- docs/reference/raw_to_tibble.html | 21 +- docs/reference/read_args.html | 21 +- docs/reference/read_funs.html | 21 +- docs/reference/read_nm_files.html | 27 +-- docs/reference/read_nm_model.html | 32 +-- docs/reference/read_nm_tables.html | 27 +-- docs/reference/reexports.html | 30 +-- docs/reference/reorder_factors.html | 21 +- docs/reference/res_vs_idv.html | 33 ++- docs/reference/res_vs_pred.html | 38 ++-- docs/reference/set_vars.html | 28 +-- docs/reference/software.html | 21 +- docs/reference/subset_xpdb.html | 18 +- docs/reference/summarise_xpdb.html | 18 +- docs/reference/summary.xpose_data.html | 18 +- docs/reference/template_titles.html | 23 +- docs/reference/tidyr_new_interface.html | 212 ++++++++++++++++++ docs/reference/transform_prm.html | 20 +- docs/reference/update_args.html | 21 +- docs/reference/update_extension.html | 21 +- docs/reference/update_themes-2.png | Bin 245899 -> 242559 bytes docs/reference/update_themes.html | 18 +- docs/reference/vpc.html | 36 ++- docs/reference/vpc_data.html | 24 +- docs/reference/vpc_opt.html | 20 +- docs/reference/xp_geoms.html | 21 +- docs/reference/xp_map.html | 21 +- docs/reference/xp_themes.html | 19 +- docs/reference/xp_var.html | 21 +- docs/reference/xpdb_ex_pk.html | 21 +- docs/reference/xpdb_index_update.html | 19 +- docs/reference/xplot_distrib.html | 36 ++- docs/reference/xplot_qq.html | 36 ++- docs/reference/xplot_scatter.html | 36 ++- docs/reference/xpose-package.html | 24 +- docs/reference/xpose_data.html | 28 +-- docs/reference/xpose_panels.html | 21 +- docs/reference/xpose_save.html | 22 +- 131 files changed, 1402 insertions(+), 1527 deletions(-) create mode 100644 docs/reference/tidyr_new_interface.html diff --git a/docs/404.html b/docs/404.html index ff861d12..5e9fa551 100644 --- a/docs/404.html +++ b/docs/404.html @@ -15,11 +15,13 @@ + + @@ -41,13 +43,14 @@ - + + @@ -75,7 +78,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -128,7 +131,6 @@ FAQ - - - - - - - @@ -470,7 +473,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/pkgdown.css b/docs/pkgdown.css index 88181704..91459581 100644 --- a/docs/pkgdown.css +++ b/docs/pkgdown.css @@ -21,8 +21,6 @@ body > .container { display: flex; height: 100%; flex-direction: column; - - padding-top: 60px; } body > .container .row { @@ -248,3 +246,11 @@ mark { .fab { font-family: "Font Awesome 5 Brands" !important; } + +/* don't display links in code chunks when printing */ +/* source: https://stackoverflow.com/a/10781533 */ +@media print { + code a:link:after, code a:visited:after { + content: ""; + } +} diff --git a/docs/pkgdown.js b/docs/pkgdown.js index 3451dfc2..087a7622 100644 --- a/docs/pkgdown.js +++ b/docs/pkgdown.js @@ -4,6 +4,11 @@ $('.navbar-fixed-top').headroom(); + $('body').css('padding-top', $('.navbar').height() + 10); + $(window).resize(function(){ + $('body').css('padding-top', $('.navbar').height() + 10); + }); + $('body').scrollspy({ target: '#sidebar', offset: 60 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 30d669cb..6b7ebb38 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,6 +1,6 @@ pandoc: 2.3.1 -pkgdown: 1.3.0.9100 -pkgdown_sha: b17fc6b19175c955348e88471316b3cbdd011f15 +pkgdown: 1.4.1 +pkgdown_sha: ~ articles: about: about.html access_xpdb_data: access_xpdb_data.html diff --git a/docs/reference/add_facet_var.html b/docs/reference/add_facet_var.html index 03aa02df..5d3c67b9 100644 --- a/docs/reference/add_facet_var.html +++ b/docs/reference/add_facet_var.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -213,7 +210,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/aes_c.html b/docs/reference/aes_c.html index ec0c89fd..23b9a521 100644 --- a/docs/reference/aes_c.html +++ b/docs/reference/aes_c.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -214,7 +211,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/aes_filter.html b/docs/reference/aes_filter.html index 00835b4e..8d23e629 100644 --- a/docs/reference/aes_filter.html +++ b/docs/reference/aes_filter.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -219,7 +216,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/aes_rename.html b/docs/reference/aes_rename.html index 76898ab3..d0422618 100644 --- a/docs/reference/aes_rename.html +++ b/docs/reference/aes_rename.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -219,7 +216,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/all_data_problem.html b/docs/reference/all_data_problem.html index 7b476692..d8ad1bf1 100644 --- a/docs/reference/all_data_problem.html +++ b/docs/reference/all_data_problem.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -210,7 +207,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/all_file_problem.html b/docs/reference/all_file_problem.html index e37b12f6..21675601 100644 --- a/docs/reference/all_file_problem.html +++ b/docs/reference/all_file_problem.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -214,7 +211,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/amt_vs_idv.html b/docs/reference/amt_vs_idv.html index 369b847b..fb1fc4c5 100644 --- a/docs/reference/amt_vs_idv.html +++ b/docs/reference/amt_vs_idv.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/as.nm.table.list.html b/docs/reference/as.nm.table.list.html index 4d254bfc..4c90d694 100644 --- a/docs/reference/as.nm.table.list.html +++ b/docs/reference/as.nm.table.list.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/as.xpdb.html b/docs/reference/as.xpdb.html index c8554815..d708f812 100644 --- a/docs/reference/as.xpdb.html +++ b/docs/reference/as.xpdb.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/as.xpose.plot.html b/docs/reference/as.xpose.plot.html index 20d4a3b0..891c50dd 100644 --- a/docs/reference/as.xpose.plot.html +++ b/docs/reference/as.xpose.plot.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/as.xpose.theme.html b/docs/reference/as.xpose.theme.html index 0e65b354..a6136a30 100644 --- a/docs/reference/as.xpose.theme.html +++ b/docs/reference/as.xpose.theme.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/check_plot_type.html b/docs/reference/check_plot_type.html index f705a60c..b92f14c9 100644 --- a/docs/reference/check_plot_type.html +++ b/docs/reference/check_plot_type.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -213,7 +210,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/check_problem.html b/docs/reference/check_problem.html index b60be708..9f9933e4 100644 --- a/docs/reference/check_problem.html +++ b/docs/reference/check_problem.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -215,7 +214,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/check_quo_vars.html b/docs/reference/check_quo_vars.html index eb9725c7..32837a2d 100644 --- a/docs/reference/check_quo_vars.html +++ b/docs/reference/check_quo_vars.html @@ -15,11 +15,13 @@ + + @@ -41,16 +43,16 @@ - + - + @@ -78,7 +80,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -131,7 +133,6 @@ FAQ - @@ -224,7 +221,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/check_scales.html b/docs/reference/check_scales.html index 1e7274f9..ec2abaa5 100644 --- a/docs/reference/check_scales.html +++ b/docs/reference/check_scales.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -214,7 +211,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/check_xpdb.html b/docs/reference/check_xpdb.html index ad7158c1..64f18004 100644 --- a/docs/reference/check_xpdb.html +++ b/docs/reference/check_xpdb.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -215,7 +212,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/combine_tables.html b/docs/reference/combine_tables.html index d2f230f4..8602c2ea 100644 --- a/docs/reference/combine_tables.html +++ b/docs/reference/combine_tables.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -211,7 +208,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/data_opt.html b/docs/reference/data_opt.html index e3f2d803..88aa2449 100644 --- a/docs/reference/data_opt.html +++ b/docs/reference/data_opt.html @@ -15,11 +15,13 @@ + + @@ -41,16 +43,16 @@ - + - + @@ -78,7 +80,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -131,7 +133,6 @@ FAQ - - @@ -212,7 +209,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/distrib_plot.html b/docs/reference/distrib_plot.html index 60c1cfa9..dfaf0b91 100644 --- a/docs/reference/distrib_plot.html +++ b/docs/reference/distrib_plot.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - - - @@ -263,7 +260,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/file_path.html b/docs/reference/file_path.html index 7807de88..fe0c8100 100644 --- a/docs/reference/file_path.html +++ b/docs/reference/file_path.html @@ -15,11 +15,13 @@ + + @@ -41,16 +43,16 @@ - + - + @@ -78,7 +80,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -131,7 +133,6 @@ FAQ - @@ -215,7 +212,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/filter_xp_theme.html b/docs/reference/filter_xp_theme.html index 12b085fa..cc4b305e 100644 --- a/docs/reference/filter_xp_theme.html +++ b/docs/reference/filter_xp_theme.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - @@ -219,7 +216,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/get_code.html b/docs/reference/get_code.html index 28642543..db43bbda 100644 --- a/docs/reference/get_code.html +++ b/docs/reference/get_code.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - - - @@ -214,7 +211,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/get_file.html b/docs/reference/get_file.html index 959681eb..e6cc9485 100644 --- a/docs/reference/get_file.html +++ b/docs/reference/get_file.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - - - @@ -209,7 +206,7 @@

Contents

-

Site built with pkgdown 1.3.0.9100.

+

Site built with pkgdown 1.4.1.

diff --git a/docs/reference/get_special.html b/docs/reference/get_special.html index e75a0a65..d3df651d 100644 --- a/docs/reference/get_special.html +++ b/docs/reference/get_special.html @@ -15,11 +15,13 @@ + + @@ -41,15 +43,15 @@ - + - + @@ -77,7 +79,7 @@ xpose - 0.4.4.9000 + 0.4.5 @@ -130,7 +132,6 @@ FAQ - - - - + 
theme_bw2(base_size = 11, base_family = "",
@@ -193,7 +194,7 @@ 
An additional set of themes for ggplot2

 
 theme_readable(base_size = 11, base_family = "",
   legend_position = "right")
- +

Arguments

@@ -211,7 +212,7 @@

Arg 'right', 'bottom', 'top', or a two-element numeric vector.

- +

Examples

# With the gg_theme theme_readable() (default)
@@ -226,7 +227,6 @@ 
Examp
     
Contents

     
 
@@ -240,7 +240,7 @@ 
Contents

 

 
 

-  
Site built with pkgdown 1.3.0.9100.

+  
Site built with pkgdown 1.4.1.

 

 
       
diff --git a/docs/reference/grab_iter.html b/docs/reference/grab_iter.html
index 2f5c7dc2..a916799d 100644
--- a/docs/reference/grab_iter.html
+++ b/docs/reference/grab_iter.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
       
-      
       
 
   
 
@@ -207,7 +206,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.3.0.9100.

+  
Site built with pkgdown 1.4.1.

 

 
       
diff --git a/docs/reference/ind_plots.html b/docs/reference/ind_plots.html
index 6dc68ab6..04261a05 100644
--- a/docs/reference/ind_plots.html
+++ b/docs/reference/ind_plots.html
@@ -16,11 +16,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -42,17 +44,17 @@
 
   
   
+
 
-
 
-
 
 
 
 
 
+
 
 
 
@@ -80,7 +82,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -133,7 +135,6 @@
   FAQ
 
       
-      
       
-      
       
-      
       
 
   
 
@@ -210,7 +207,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.3.0.9100.

+  
Site built with pkgdown 1.4.1.

 

 
       
diff --git a/docs/reference/is.nm.model.html b/docs/reference/is.nm.model.html
index c538a80e..6ccfa1af 100644
--- a/docs/reference/is.nm.model.html
+++ b/docs/reference/is.nm.model.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
       
-      
       
 
   
 
@@ -210,7 +207,7 @@ 
Contents

 
 
 

-  
Site built with pkgdown 1.3.0.9100.

+  
Site built with pkgdown 1.4.1.

 

 
       
diff --git a/docs/reference/is.nm.table.list.html b/docs/reference/is.nm.table.list.html
index b402411e..99ccd89c 100644
--- a/docs/reference/is.nm.table.list.html
+++ b/docs/reference/is.nm.table.list.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
       
-      
       
 
   
 
@@ -210,7 +207,7 @@ 
Contents

 
 
 

-  
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diff --git a/docs/reference/is.xpdb.html b/docs/reference/is.xpdb.html
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Contents

 
 
 

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Site built with pkgdown 1.3.0.9100.

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diff --git a/docs/reference/last_data_problem.html b/docs/reference/last_data_problem.html
index bd9ff121..8a1f6212 100644
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diff --git a/docs/reference/last_file_method.html b/docs/reference/last_file_method.html
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Contents

 
 
 

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Site built with pkgdown 1.3.0.9100.

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diff --git a/docs/reference/last_file_problem.html b/docs/reference/last_file_problem.html
index 0f9c94e6..cd8b07e1 100644
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diff --git a/docs/reference/last_file_subprob.html b/docs/reference/last_file_subprob.html
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diff --git a/docs/reference/list_nm_tables.html b/docs/reference/list_nm_tables.html
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diff --git a/docs/reference/list_vars.html b/docs/reference/list_vars.html
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diff --git a/docs/reference/manual_nm_import.html b/docs/reference/manual_nm_import.html
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diff --git a/docs/reference/minimization_plots.html b/docs/reference/minimization_plots.html
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diff --git a/docs/reference/only_obs.html b/docs/reference/only_obs.html
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Contents

 
 
 

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diff --git a/docs/reference/parse_arg.html b/docs/reference/parse_arg.html
index f1bb931c..9f77c223 100644
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Contents

 
 
 

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Contents

 
 
 

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diff --git a/docs/reference/parse_title.html b/docs/reference/parse_title.html
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diff --git a/docs/reference/pred_vs_idv.html b/docs/reference/pred_vs_idv.html
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diff --git a/docs/reference/read_nm_files.html b/docs/reference/read_nm_files.html
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diff --git a/docs/reference/reorder_factors.html b/docs/reference/reorder_factors.html
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diff --git a/docs/reference/res_vs_idv.html b/docs/reference/res_vs_idv.html
index 8ce0d4ae..fd07beb4 100644
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   FAQ
 
       
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  • 
   About
@@ -175,7 +177,6 @@ 
    A set of xpose themes
    
     
 
     
    
-    
     
    xpose themes are used to consistently apply a set of preference for the plot geoms 
 (e.g. color scales, point size, etc.) whereas ggplot2 theme focus on the plot background, axes, 
 titles etc.
    
@@ -183,13 +184,14 @@ 
    A set of xpose themes
    
 
  • theme_xp_default: The default xp_theme in xpose
    • 
 
  • theme_xp_xpose4: An xp_theme that makes xpose look like xpose4.
    • 
 

-    
+
     
 
     
theme_xp_default()
 
 theme_xp_xpose4()

-        
+
+
 
     
Examples

     
# With the xp_theme theme_xp_default() (default)
@@ -203,7 +205,6 @@ 
Examp
   
 
 

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Site built with pkgdown 1.3.0.9100.

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diff --git a/docs/reference/xp_var.html b/docs/reference/xp_var.html
index 5dd2b609..36fb211c 100644
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   FAQ
 
       
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  • 
   About
@@ -169,13 +170,11 @@ 
    Access xpdb index information for a given variable or variable type
    
     
 
     
    
-    
     
    Access xpdb index information for a given variable or variable type
    
-    
     
    
 
     
    xp_var(xpdb, .problem, col = NULL, type = NULL, silent = FALSE)
    
-    
+
     
    Arguments
    
     
@@ -200,23 +199,21 @@ 
    Arg
       
    
     
    Should the function be silent or return errors.
    		
     
    
     
    
-    
+
     
    Value
    
 
     
    A subset of the xpdb index as tibble with columns: 
 col (column name), type (column type in the index), 
 label (label associated with the column) and units 
 (units associated with the column)
    
-    
 
   
   

 
   
 
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Contents

 
 
 

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Site built with pkgdown 1.3.0.9100.

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diff --git a/docs/reference/xpdb_ex_pk.html b/docs/reference/xpdb_ex_pk.html
index de8f17a1..b6eec856 100644
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-      
       
    
         
  • 
   About
@@ -169,23 +170,20 @@ 
    xpose_data examples
    
     
 
     
    
-    
     
    Moxonidine xpose_data example.
    
-    
     
    
 
-        
+
+
     
    Format
    
 
     
    An xpose_data object
    
-    
     
    Source
    
 
     
    Moxonidine model: 
 Assumption Testing in Population Pharmacokinetic Models: Illustrated with an Analysis of 
 Moxonidine Data from Congestive Heart Failure Patients. Journal of Pharmacokinetics and 
 Biopharmaceutics. 26(2):207–246 (1998).
    
-    
 
     
    Examples
    
     
    print(xpdb_ex_pk)
    #> run001.lst overview: 
@@ -203,11 +201,8 @@ 
    Examp
   
 
 
    
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    Site built with pkgdown 1.3.0.9100.
    
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diff --git a/docs/reference/xpdb_index_update.html b/docs/reference/xpdb_index_update.html
index 8fdd6c8f..c4427bcb 100644
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   FAQ
 
    • 
       

-      
       
    
         
  • 
   About
@@ -169,13 +170,11 @@ 
    Update data index
    
     
 
     
    
-    
     
    Function dedicated to update the data index after modifications.
    
-    
     
    
 
     
    xpdb_index_update(xpdb, .problem)
    
-    
+
     
    Arguments
    
     
@@ -188,14 +187,14 @@ 
    Arg
       
    
     
    The problem from which the index will be updated.
    		
     
    
     
    
-    
+
 
   
   

 
   
 
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Contents

 
 
 

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Site built with pkgdown 1.3.0.9100.

+  
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diff --git a/docs/reference/xplot_distrib.html b/docs/reference/xplot_distrib.html
index f1fe34eb..70ea3252 100644
--- a/docs/reference/xplot_distrib.html
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   FAQ
 
       
-      
       
    
         
  • 
   About
@@ -169,16 +170,14 @@ 
    Default xpose distribution plot function
    
     
 
     
    
-    
     
    Manually generate distribution plots from an xpdb object.
    
-    
     
    
 
     
    xplot_distrib(xpdb, mapping = NULL, type = "hr", guide = FALSE,
   xscale = "continuous", yscale = "continuous", title = NULL,
   subtitle = NULL, caption = NULL, tag = NULL,
   plot_name = "density_plot", gg_theme, xp_theme, opt, quiet, ...)
    
-    
+
     
    Arguments
    
     
@@ -255,11 +254,12 @@ 
    Arg
       
    
     
    Any additional aesthetics.
    		
     
    
     
    
-    
+
     
    Layers mapping
    
 
     
-    
    Plots can be customized by mapping arguments to specific layers. The naming convention is 
+
+
    Plots can be customized by mapping arguments to specific layers. The naming convention is 
 layer_option where layer is one of the names defined in the list below and option is 
 any option supported by this layer e.g. histogram_fill = 'blue', rug_sides = 'b', etc.
      
 
    • histogram: options to geom_histogram
      • 
@@ -268,11 +268,12 @@ 
      Faceting
      
 
     
-    
      Every xpose plot function has built-in faceting functionalities. Faceting arguments 
+
+
      Every xpose plot function has built-in faceting functionalities. Faceting arguments 
 are passed to the functions facet_wrap_paginate when the facets 
 argument is a character string (e.g. facets = c('SEX', 'MED1')) or 
 facet_grid_paginate when facets is a formula (e.g. facets = SEX~MED1).
@@ -287,22 +288,20 @@ 
      Facet
 eta_distrib(). When using the facets argument, `variable` needs to be added manually 
 e.g. facets = c('SEX', 'variable') or facets = c('SEX', 'variable'), but is optional, 
 when using the facets argument in xp_theme variable is automatically added whenever needed.
      
-    
     
      Template titles
      
 
     
-    
      Template titles can be used to create highly informative diagnostics plots. 
+
+
      Template titles can be used to create highly informative diagnostics plots. 
 They can be applied to any plot title, subtitle, caption and tag. Template titles 
 are defined via a single string containing key variables staring with a `@` (e.g. `@ofv`)
 which will be replaced by their actual value when rendering the plot.
 For example `'@run, @nobs observations in @nind subjects'` would become 
 `'run001, 1022 observations in 74 subjects'`. The available key variables 
 are listed under template_titles.
      
-    
     
      See also
      
 
     
      xplot_scatter xplot_qq
      
-    
 
     
      Examples
      
     
      # A simple histogram
@@ -315,15 +314,10 @@ 
      Examp
     
      Contents
      
     
 
@@ -337,7 +331,7 @@ 
      Contents
      
 
      
 
 
      
-  
      Site built with pkgdown 1.3.0.9100.
      
+  
      Site built with pkgdown 1.4.1.
      
 
      
 
       
diff --git a/docs/reference/xplot_qq.html b/docs/reference/xplot_qq.html
index c40d8130..bdf3cdab 100644
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@@ -130,7 +132,6 @@
   FAQ
 
       
    
-      
       
      
         
    • 
   About
@@ -169,16 +170,14 @@ 
      Default xpose QQ plot function
      
     
 
     
      
-    
     
      Manually generate QQ plots from an xpdb object.
      
-    
     
      
 
     
      xplot_qq(xpdb, mapping = NULL, type = "p", guide = FALSE,
   xscale = "continuous", yscale = "continuous", title = NULL,
   subtitle = NULL, caption = NULL, tag = NULL,
   plot_name = "qq_plot", gg_theme, xp_theme, opt, quiet, ...)
      
-    
+
     
      Arguments
      
     
@@ -254,11 +253,12 @@ 
      Arg
       
      
     
      Any additional aesthetics.
      		
     
      
     
      
-    
+
     
      Layers mapping
      
 
     
-    
      Plots can be customized by mapping arguments to specific layers. The naming convention is 
+
+
      Plots can be customized by mapping arguments to specific layers. The naming convention is 
 layer_option where layer is one of the names defined in the list below and option is 
 any option supported by this layer e.g. point_color = 'blue', etc.
        
 
      • point: options to geom_point
        • 
@@ -266,11 +266,12 @@ 
        Faceting
        
 
     
-    
        Every xpose plot function has built-in faceting functionalities. Faceting arguments 
+
+
        Every xpose plot function has built-in faceting functionalities. Faceting arguments 
 are passed to the functions facet_wrap_paginate when the facets 
 argument is a character string (e.g. facets = c('SEX', 'MED1')) or 
 facet_grid_paginate when facets is a formula (e.g. facets = SEX~MED1).
@@ -285,22 +286,20 @@ 
        Facet
 eta_distrib(). When using the facets argument, `variable` needs to be added manually 
 e.g. facets = c('SEX', 'variable') or facets = c('SEX', 'variable'), but is optional, 
 when using the facets argument in xp_theme variable is automatically added whenever needed.
        
-    
     
        Template titles
        
 
     
-    
        Template titles can be used to create highly informative diagnostics plots. 
+
+
        Template titles can be used to create highly informative diagnostics plots. 
 They can be applied to any plot title, subtitle, caption and tag. Template titles 
 are defined via a single string containing key variables staring with a `@` (e.g. `@ofv`)
 which will be replaced by their actual value when rendering the plot.
 For example `'@run, @nobs observations in @nind subjects'` would become 
 `'run001, 1022 observations in 74 subjects'`. The available key variables 
 are listed under template_titles.
        
-    
     
        See also
        
 
     
        xplot_scatter xplot_distrib
        
-    
 
     
        Examples
        
     
        xplot_qq(xpdb_ex_pk, aes(sample = CWRES), guide = TRUE)
        #> Using data from $prob no.1
        
@@ -310,15 +309,10 @@ 
        Examp
     
        Contents
        
     
 
@@ -332,7 +326,7 @@ 
        Contents
        
 
        
 
 
        
-  
        Site built with pkgdown 1.3.0.9100.
        
+  
        Site built with pkgdown 1.4.1.
        
 
        
 
       
diff --git a/docs/reference/xplot_scatter.html b/docs/reference/xplot_scatter.html
index 89171da4..acf6cd06 100644
--- a/docs/reference/xplot_scatter.html
+++ b/docs/reference/xplot_scatter.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
       
      
-      
       
        
         
      • 
   About
@@ -169,16 +170,14 @@ 
        Default xpose scatter plot function
        
     
 
     
        
-    
     
        Manually generate scatter plots from an xpdb object.
        
-    
     
        
 
     
        xplot_scatter(xpdb, mapping = NULL, group = "ID", type = "pls",
   guide = FALSE, xscale = "continuous", yscale = "continuous",
   title = NULL, subtitle = NULL, caption = NULL, tag = NULL,
   plot_name = "scatter_plot", gg_theme, xp_theme, opt, quiet, ...)
        
-    
+
     
        Arguments
        
     
@@ -259,11 +258,12 @@ 
        Arg
       
        
     
        Any additional aesthetics.
        		
     
        
     
        
-    
+
     
        Layers mapping
        
 
     
-    
        Plots can be customized by mapping arguments to specific layers. The naming convention is 
+
+
        Plots can be customized by mapping arguments to specific layers. The naming convention is 
 layer_option where layer is one of the names defined in the list below and option is 
 any option supported by this layer e.g. point_color = 'blue', smooth_method = 'lm', etc.
          
 
        • point: options to geom_point
          • 
@@ -274,11 +274,12 @@ 
          Faceting
          
 
     
-    
          Every xpose plot function has built-in faceting functionalities. Faceting arguments 
+
+
          Every xpose plot function has built-in faceting functionalities. Faceting arguments 
 are passed to the functions facet_wrap_paginate when the facets 
 argument is a character string (e.g. facets = c('SEX', 'MED1')) or 
 facet_grid_paginate when facets is a formula (e.g. facets = SEX~MED1).
@@ -293,22 +294,20 @@ 
          Facet
 eta_distrib(). When using the facets argument, `variable` needs to be added manually 
 e.g. facets = c('SEX', 'variable') or facets = c('SEX', 'variable'), but is optional, 
 when using the facets argument in xp_theme variable is automatically added whenever needed.
          
-    
     
          Template titles
          
 
     
-    
          Template titles can be used to create highly informative diagnostics plots. 
+
+
          Template titles can be used to create highly informative diagnostics plots. 
 They can be applied to any plot title, subtitle, caption and tag. Template titles 
 are defined via a single string containing key variables staring with a `@` (e.g. `@ofv`)
 which will be replaced by their actual value when rendering the plot.
 For example `'@run, @nobs observations in @nind subjects'` would become 
 `'run001, 1022 observations in 74 subjects'`. The available key variables 
 are listed under template_titles.
          
-    
     
          See also
          
 
     
          xplot_distrib xplot_qq
          
-    
 
     
          Examples
          
     
          xplot_scatter(xpdb_ex_pk, aes(x = IPRED, y = DV))
          #> Using data from $prob no.1
          
@@ -318,15 +317,10 @@ 
          Examp
     
          Contents
          
     
 
@@ -340,7 +334,7 @@ 
          Contents
          
 
          
 
 
          
-  
          Site built with pkgdown 1.3.0.9100.
          
+  
          Site built with pkgdown 1.4.1.
          
 
          
 
       
diff --git a/docs/reference/xpose-package.html b/docs/reference/xpose-package.html
index 5e672545..0c518fa6 100644
--- a/docs/reference/xpose-package.html
+++ b/docs/reference/xpose-package.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,17 +43,17 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -79,7 +81,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -132,7 +134,6 @@
   FAQ
 
       
        
-      
       
+
+
 
   
   
      
 
     
      Author
      
     
      Maintainer: Benjamin Guiastrennec guiastrennec@gmail.com [copyright holder]
      
@@ -218,7 +218,7 @@ 
      Author
      
 
 
 
      
-  
      Site built with pkgdown 1.3.0.9100.
      
+  
      Site built with pkgdown 1.4.1.
      
 
      
 
       
diff --git a/docs/reference/xpose_data.html b/docs/reference/xpose_data.html
index 5e7450db..8ad4ef30 100644
--- a/docs/reference/xpose_data.html
+++ b/docs/reference/xpose_data.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
      • 
       
    
-      
       
      
         
    • 
   About
@@ -169,16 +170,14 @@ 
      Import NONMEM output into R
      
     
 
     
      
-    
     
      Gather model outputs into a R database
      
-    
     
      
 
     
      xpose_data(runno = NULL, prefix = "run", ext = ".lst", file = NULL,
   dir = NULL, gg_theme = theme_readable,
   xp_theme = theme_xp_default(), simtab = NULL, manual_import = NULL,
   ignore = NULL, extra_files, quiet, ...)
      
-    
+
     
      Arguments
      
     
@@ -251,7 +250,7 @@ 
      Arg
 read_nm_tables functions.
      
     
     
      
     
      
-    
+
     
      File path generation
      
 
     
      The rules for model file names generation are
@@ -266,7 +265,7 @@ 
      Table format requirement
      
 
     
      When importing data, an ID column
@@ -275,10 +274,9 @@ 
      Examples
      
-    
      # NOT RUN {
+    
      if (FALSE) {
 # Using the `file` argument to point to the model file:
 xpdb <- xpose_data(file = 'run001.lst', dir = 'models')
 
@@ -294,18 +292,14 @@ 
      Examp
 # Using `simtab` to disable import of simulation tables
 xpdb <- xpose_data(file = 'run001.lst', dir = 'models', simtab = FALSE)
 
-# }
      
-
      
+}
      
   
   
 
 
      
-  
      Site built with pkgdown 1.3.0.9100.
      
+  
      Site built with pkgdown 1.4.1.
      
 
      
 
       
diff --git a/docs/reference/xpose_panels.html b/docs/reference/xpose_panels.html
index 2a8befa5..249c7fd9 100644
--- a/docs/reference/xpose_panels.html
+++ b/docs/reference/xpose_panels.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,15 +43,15 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -77,7 +79,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -130,7 +132,6 @@
   FAQ
 
      • 
       
    
-      
       
      
         
    • 
   About
@@ -169,13 +170,11 @@ 
      Generic panel function for `xpose_plots`
      
     
 
     
      
-    
     
      Convenience wrapper around ggforce faceting functions.
      
-    
     
      
 
     
      xpose_panels(xp_theme, extra_args)
      
-    
+
     
      Arguments
      
     
@@ -189,21 +188,19 @@ 
      Arg
 faceting functions.
      
     
     
      
     
      
-    
+
     
      Value
      
 
     
      Output a `facet` layer. Layer will be `facet_wrap_paginate` if 
 `facets` is a string, and `facet_grid_paginate` if `facets` is a formula.
      
-    
 
   
   
    
 
   
 
@@ -215,7 +212,7 @@ 
    Contents
    
 
 
 
    
-  
    Site built with pkgdown 1.3.0.9100.
    
+  
    Site built with pkgdown 1.4.1.
    
 
    
 
       
diff --git a/docs/reference/xpose_save.html b/docs/reference/xpose_save.html
index 463c75ff..21a1e3c6 100644
--- a/docs/reference/xpose_save.html
+++ b/docs/reference/xpose_save.html
@@ -15,11 +15,13 @@
 
 
 
+
 
 
 
 
 
+
 
 
 
@@ -41,16 +43,16 @@
 
   
   
-
 
+
 
-
 
 
 
 
 
+
 
 
 
@@ -78,7 +80,7 @@
       
       
         xpose
-        0.4.4.9000
+        0.4.5
       
     
 
@@ -131,7 +133,6 @@
   FAQ
 
    • 
       

-      
       
    
         
  • 
   About
@@ -170,16 +171,14 @@ 
    Save xpose plot
    
     
 
     
    
-    
     
    Inspired by the ggsave, this function 
 facilitates the export of xpose plots.
    
-    
     
    
 
     
    xpose_save(plot = last_plot(), file = NULL, dir = NULL,
   device = NULL, width = 7, height = 6, units = c("in", "cm",
   "mm"), dpi = 200, ...)
    
-    
+
     
    Arguments
    
     
@@ -222,20 +221,19 @@ 
    Arg
       
    
     
    Additional arguments passed on to ggsave or graphics device.
    		
     
    
     
    
-    
+
 
     
    Examples
    
-    
    # NOT RUN {
+    
    if (FALSE) {
 xpdb_ex_pk %>%
  dv_vs_ipred() %>%
  xpose_save(file = file.path(tempdir(), "dv_vs_ipred_example.pdf"))
-# }
    
+}
    
   
   
 
 
    
-  
    Site built with pkgdown 1.3.0.9100.
    
+  
    Site built with pkgdown 1.4.1.