").addClass(errClass).css("position", "absolute")
- .css("top", el.offsetTop)
- .css("left", el.offsetLeft)
- // setting width can push out the page size, forcing otherwise
- // unnecessary scrollbars to appear and making it impossible for
- // the element to shrink; so use max-width instead
- .css("maxWidth", el.offsetWidth)
- .css("height", el.offsetHeight);
- errorDiv.text(err.message);
- $el.after(errorDiv);
-
- // Really dumb way to keep the size/position of the error in sync with
- // the parent element as the window is resized or whatever.
- var intId = setInterval(function() {
- if (!errorDiv[0].parentElement) {
- clearInterval(intId);
- return;
- }
- errorDiv
- .css("top", el.offsetTop)
- .css("left", el.offsetLeft)
- .css("maxWidth", el.offsetWidth)
- .css("height", el.offsetHeight);
- }, 500);
- }
- }
- },
- clearError: function(el) {
- var $el = $(el);
- var display = $el.data("restore-display-mode");
- $el.data("restore-display-mode", null);
-
- if (display === "inline" || display === "inline-block") {
- if (display)
- $el.css("display", display);
- $(el.nextSibling).filter(".htmlwidgets-error").remove();
- } else if (display === "block"){
- $el.css("visibility", "inherit");
- $(el.nextSibling).filter(".htmlwidgets-error").remove();
- }
- },
- sizing: {}
- };
-
- // Called by widget bindings to register a new type of widget. The definition
- // object can contain the following properties:
- // - name (required) - A string indicating the binding name, which will be
- // used by default as the CSS classname to look for.
- // - initialize (optional) - A function(el) that will be called once per
- // widget element; if a value is returned, it will be passed as the third
- // value to renderValue.
- // - renderValue (required) - A function(el, data, initValue) that will be
- // called with data. Static contexts will cause this to be called once per
- // element; Shiny apps will cause this to be called multiple times per
- // element, as the data changes.
- window.HTMLWidgets.widget = function(definition) {
- if (!definition.name) {
- throw new Error("Widget must have a name");
- }
- if (!definition.type) {
- throw new Error("Widget must have a type");
- }
- // Currently we only support output widgets
- if (definition.type !== "output") {
- throw new Error("Unrecognized widget type '" + definition.type + "'");
- }
- // TODO: Verify that .name is a valid CSS classname
-
- // Support new-style instance-bound definitions. Old-style class-bound
- // definitions have one widget "object" per widget per type/class of
- // widget; the renderValue and resize methods on such widget objects
- // take el and instance arguments, because the widget object can't
- // store them. New-style instance-bound definitions have one widget
- // object per widget instance; the definition that's passed in doesn't
- // provide renderValue or resize methods at all, just the single method
- // factory(el, width, height)
- // which returns an object that has renderValue(x) and resize(w, h).
- // This enables a far more natural programming style for the widget
- // author, who can store per-instance state using either OO-style
- // instance fields or functional-style closure variables (I guess this
- // is in contrast to what can only be called C-style pseudo-OO which is
- // what we required before).
- if (definition.factory) {
- definition = createLegacyDefinitionAdapter(definition);
- }
-
- if (!definition.renderValue) {
- throw new Error("Widget must have a renderValue function");
- }
-
- // For static rendering (non-Shiny), use a simple widget registration
- // scheme. We also use this scheme for Shiny apps/documents that also
- // contain static widgets.
- window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || [];
- // Merge defaults into the definition; don't mutate the original definition.
- var staticBinding = extend({}, defaults, definition);
- overrideMethod(staticBinding, "find", function(superfunc) {
- return function(scope) {
- var results = superfunc(scope);
- // Filter out Shiny outputs, we only want the static kind
- return filterByClass(results, "html-widget-output", false);
- };
- });
- window.HTMLWidgets.widgets.push(staticBinding);
-
- if (shinyMode) {
- // Shiny is running. Register the definition with an output binding.
- // The definition itself will not be the output binding, instead
- // we will make an output binding object that delegates to the
- // definition. This is because we foolishly used the same method
- // name (renderValue) for htmlwidgets definition and Shiny bindings
- // but they actually have quite different semantics (the Shiny
- // bindings receive data that includes lots of metadata that it
- // strips off before calling htmlwidgets renderValue). We can't
- // just ignore the difference because in some widgets it's helpful
- // to call this.renderValue() from inside of resize(), and if
- // we're not delegating, then that call will go to the Shiny
- // version instead of the htmlwidgets version.
-
- // Merge defaults with definition, without mutating either.
- var bindingDef = extend({}, defaults, definition);
-
- // This object will be our actual Shiny binding.
- var shinyBinding = new Shiny.OutputBinding();
-
- // With a few exceptions, we'll want to simply use the bindingDef's
- // version of methods if they are available, otherwise fall back to
- // Shiny's defaults. NOTE: If Shiny's output bindings gain additional
- // methods in the future, and we want them to be overrideable by
- // HTMLWidget binding definitions, then we'll need to add them to this
- // list.
- delegateMethod(shinyBinding, bindingDef, "getId");
- delegateMethod(shinyBinding, bindingDef, "onValueChange");
- delegateMethod(shinyBinding, bindingDef, "onValueError");
- delegateMethod(shinyBinding, bindingDef, "renderError");
- delegateMethod(shinyBinding, bindingDef, "clearError");
- delegateMethod(shinyBinding, bindingDef, "showProgress");
-
- // The find, renderValue, and resize are handled differently, because we
- // want to actually decorate the behavior of the bindingDef methods.
-
- shinyBinding.find = function(scope) {
- var results = bindingDef.find(scope);
-
- // Only return elements that are Shiny outputs, not static ones
- var dynamicResults = results.filter(".html-widget-output");
-
- // It's possible that whatever caused Shiny to think there might be
- // new dynamic outputs, also caused there to be new static outputs.
- // Since there might be lots of different htmlwidgets bindings, we
- // schedule execution for later--no need to staticRender multiple
- // times.
- if (results.length !== dynamicResults.length)
- scheduleStaticRender();
-
- return dynamicResults;
- };
-
- // Wrap renderValue to handle initialization, which unfortunately isn't
- // supported natively by Shiny at the time of this writing.
-
- shinyBinding.renderValue = function(el, data) {
- Shiny.renderDependencies(data.deps);
- // Resolve strings marked as javascript literals to objects
- if (!(data.evals instanceof Array)) data.evals = [data.evals];
- for (var i = 0; data.evals && i < data.evals.length; i++) {
- window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]);
- }
- if (!bindingDef.renderOnNullValue) {
- if (data.x === null) {
- el.style.visibility = "hidden";
- return;
- } else {
- el.style.visibility = "inherit";
- }
- }
- if (!elementData(el, "initialized")) {
- initSizing(el);
-
- elementData(el, "initialized", true);
- if (bindingDef.initialize) {
- var result = bindingDef.initialize(el, el.offsetWidth,
- el.offsetHeight);
- elementData(el, "init_result", result);
- }
- }
- bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
- evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
- };
-
- // Only override resize if bindingDef implements it
- if (bindingDef.resize) {
- shinyBinding.resize = function(el, width, height) {
- // Shiny can call resize before initialize/renderValue have been
- // called, which doesn't make sense for widgets.
- if (elementData(el, "initialized")) {
- bindingDef.resize(el, width, height, elementData(el, "init_result"));
- }
- };
- }
-
- Shiny.outputBindings.register(shinyBinding, bindingDef.name);
- }
- };
-
- var scheduleStaticRenderTimerId = null;
- function scheduleStaticRender() {
- if (!scheduleStaticRenderTimerId) {
- scheduleStaticRenderTimerId = setTimeout(function() {
- scheduleStaticRenderTimerId = null;
- window.HTMLWidgets.staticRender();
- }, 1);
- }
- }
-
- // Render static widgets after the document finishes loading
- // Statically render all elements that are of this widget's class
- window.HTMLWidgets.staticRender = function() {
- var bindings = window.HTMLWidgets.widgets || [];
- forEach(bindings, function(binding) {
- var matches = binding.find(document.documentElement);
- forEach(matches, function(el) {
- var sizeObj = initSizing(el, binding);
-
- if (hasClass(el, "html-widget-static-bound"))
- return;
- el.className = el.className + " html-widget-static-bound";
-
- var initResult;
- if (binding.initialize) {
- initResult = binding.initialize(el,
- sizeObj ? sizeObj.getWidth() : el.offsetWidth,
- sizeObj ? sizeObj.getHeight() : el.offsetHeight
- );
- elementData(el, "init_result", initResult);
- }
-
- if (binding.resize) {
- var lastSize = {};
- var resizeHandler = function(e) {
- var size = {
- w: sizeObj ? sizeObj.getWidth() : el.offsetWidth,
- h: sizeObj ? sizeObj.getHeight() : el.offsetHeight
- };
- if (size.w === 0 && size.h === 0)
- return;
- if (size.w === lastSize.w && size.h === lastSize.h)
- return;
- lastSize = size;
- binding.resize(el, size.w, size.h, initResult);
- };
-
- on(window, "resize", resizeHandler);
-
- // This is needed for cases where we're running in a Shiny
- // app, but the widget itself is not a Shiny output, but
- // rather a simple static widget. One example of this is
- // an rmarkdown document that has runtime:shiny and widget
- // that isn't in a render function. Shiny only knows to
- // call resize handlers for Shiny outputs, not for static
- // widgets, so we do it ourselves.
- if (window.jQuery) {
- window.jQuery(document).on(
- "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets",
- resizeHandler
- );
- window.jQuery(document).on(
- "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets",
- resizeHandler
- );
- }
-
- // This is needed for the specific case of ioslides, which
- // flips slides between display:none and display:block.
- // Ideally we would not have to have ioslide-specific code
- // here, but rather have ioslides raise a generic event,
- // but the rmarkdown package just went to CRAN so the
- // window to getting that fixed may be long.
- if (window.addEventListener) {
- // It's OK to limit this to window.addEventListener
- // browsers because ioslides itself only supports
- // such browsers.
- on(document, "slideenter", resizeHandler);
- on(document, "slideleave", resizeHandler);
- }
- }
-
- var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']");
- if (scriptData) {
- var data = JSON.parse(scriptData.textContent || scriptData.text);
- // Resolve strings marked as javascript literals to objects
- if (!(data.evals instanceof Array)) data.evals = [data.evals];
- for (var k = 0; data.evals && k < data.evals.length; k++) {
- window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]);
- }
- binding.renderValue(el, data.x, initResult);
- evalAndRun(data.jsHooks.render, initResult, [el, data.x]);
- }
- });
- });
-
- invokePostRenderHandlers();
- }
-
- // Wait until after the document has loaded to render the widgets.
- if (document.addEventListener) {
- document.addEventListener("DOMContentLoaded", function() {
- document.removeEventListener("DOMContentLoaded", arguments.callee, false);
- window.HTMLWidgets.staticRender();
- }, false);
- } else if (document.attachEvent) {
- document.attachEvent("onreadystatechange", function() {
- if (document.readyState === "complete") {
- document.detachEvent("onreadystatechange", arguments.callee);
- window.HTMLWidgets.staticRender();
- }
- });
- }
-
-
- window.HTMLWidgets.getAttachmentUrl = function(depname, key) {
- // If no key, default to the first item
- if (typeof(key) === "undefined")
- key = 1;
-
- var link = document.getElementById(depname + "-" + key + "-attachment");
- if (!link) {
- throw new Error("Attachment " + depname + "/" + key + " not found in document");
- }
- return link.getAttribute("href");
- };
-
- window.HTMLWidgets.dataframeToD3 = function(df) {
- var names = [];
- var length;
- for (var name in df) {
- if (df.hasOwnProperty(name))
- names.push(name);
- if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") {
- throw new Error("All fields must be arrays");
- } else if (typeof(length) !== "undefined" && length !== df[name].length) {
- throw new Error("All fields must be arrays of the same length");
- }
- length = df[name].length;
- }
- var results = [];
- var item;
- for (var row = 0; row < length; row++) {
- item = {};
- for (var col = 0; col < names.length; col++) {
- item[names[col]] = df[names[col]][row];
- }
- results.push(item);
- }
- return results;
- };
-
- window.HTMLWidgets.transposeArray2D = function(array) {
- if (array.length === 0) return array;
- var newArray = array[0].map(function(col, i) {
- return array.map(function(row) {
- return row[i]
- })
- });
- return newArray;
- };
- // Split value at splitChar, but allow splitChar to be escaped
- // using escapeChar. Any other characters escaped by escapeChar
- // will be included as usual (including escapeChar itself).
- function splitWithEscape(value, splitChar, escapeChar) {
- var results = [];
- var escapeMode = false;
- var currentResult = "";
- for (var pos = 0; pos < value.length; pos++) {
- if (!escapeMode) {
- if (value[pos] === splitChar) {
- results.push(currentResult);
- currentResult = "";
- } else if (value[pos] === escapeChar) {
- escapeMode = true;
- } else {
- currentResult += value[pos];
- }
- } else {
- currentResult += value[pos];
- escapeMode = false;
- }
- }
- if (currentResult !== "") {
- results.push(currentResult);
- }
- return results;
- }
- // Function authored by Yihui/JJ Allaire
- window.HTMLWidgets.evaluateStringMember = function(o, member) {
- var parts = splitWithEscape(member, '.', '\\');
- for (var i = 0, l = parts.length; i < l; i++) {
- var part = parts[i];
- // part may be a character or 'numeric' member name
- if (o !== null && typeof o === "object" && part in o) {
- if (i == (l - 1)) { // if we are at the end of the line then evalulate
- if (typeof o[part] === "string")
- o[part] = eval("(" + o[part] + ")");
- } else { // otherwise continue to next embedded object
- o = o[part];
- }
- }
- }
- };
-
- // Retrieve the HTMLWidget instance (i.e. the return value of an
- // HTMLWidget binding's initialize() or factory() function)
- // associated with an element, or null if none.
- window.HTMLWidgets.getInstance = function(el) {
- return elementData(el, "init_result");
- };
-
- // Finds the first element in the scope that matches the selector,
- // and returns the HTMLWidget instance (i.e. the return value of
- // an HTMLWidget binding's initialize() or factory() function)
- // associated with that element, if any. If no element matches the
- // selector, or the first matching element has no HTMLWidget
- // instance associated with it, then null is returned.
- //
- // The scope argument is optional, and defaults to window.document.
- window.HTMLWidgets.find = function(scope, selector) {
- if (arguments.length == 1) {
- selector = scope;
- scope = document;
- }
-
- var el = scope.querySelector(selector);
- if (el === null) {
- return null;
- } else {
- return window.HTMLWidgets.getInstance(el);
- }
- };
-
- // Finds all elements in the scope that match the selector, and
- // returns the HTMLWidget instances (i.e. the return values of
- // an HTMLWidget binding's initialize() or factory() function)
- // associated with the elements, in an array. If elements that
- // match the selector don't have an associated HTMLWidget
- // instance, the returned array will contain nulls.
- //
- // The scope argument is optional, and defaults to window.document.
- window.HTMLWidgets.findAll = function(scope, selector) {
- if (arguments.length == 1) {
- selector = scope;
- scope = document;
- }
-
- var nodes = scope.querySelectorAll(selector);
- var results = [];
- for (var i = 0; i < nodes.length; i++) {
- results.push(window.HTMLWidgets.getInstance(nodes[i]));
- }
- return results;
- };
-
- var postRenderHandlers = [];
- function invokePostRenderHandlers() {
- while (postRenderHandlers.length) {
- var handler = postRenderHandlers.shift();
- if (handler) {
- handler();
- }
- }
- }
-
- // Register the given callback function to be invoked after the
- // next time static widgets are rendered.
- window.HTMLWidgets.addPostRenderHandler = function(callback) {
- postRenderHandlers.push(callback);
- };
-
- // Takes a new-style instance-bound definition, and returns an
- // old-style class-bound definition. This saves us from having
- // to rewrite all the logic in this file to accomodate both
- // types of definitions.
- function createLegacyDefinitionAdapter(defn) {
- var result = {
- name: defn.name,
- type: defn.type,
- initialize: function(el, width, height) {
- return defn.factory(el, width, height);
- },
- renderValue: function(el, x, instance) {
- return instance.renderValue(x);
- },
- resize: function(el, width, height, instance) {
- return instance.resize(width, height);
- }
- };
-
- if (defn.find)
- result.find = defn.find;
- if (defn.renderError)
- result.renderError = defn.renderError;
- if (defn.clearError)
- result.clearError = defn.clearError;
-
- return result;
- }
-})();
-
diff --git a/docs/articles/interactive_plots_files/htmlwidgets-0.8/htmlwidgets.js b/docs/articles/interactive_plots_files/htmlwidgets-1.3/htmlwidgets.js
similarity index 99%
rename from docs/articles/interactive_plots_files/htmlwidgets-0.8/htmlwidgets.js
rename to docs/articles/interactive_plots_files/htmlwidgets-1.3/htmlwidgets.js
index 7193c78a..ed9837d9 100644
--- a/docs/articles/interactive_plots_files/htmlwidgets-0.8/htmlwidgets.js
+++ b/docs/articles/interactive_plots_files/htmlwidgets-1.3/htmlwidgets.js
@@ -489,6 +489,7 @@
// supported natively by Shiny at the time of this writing.
shinyBinding.renderValue = function(el, data) {
+ Shiny.renderDependencies(data.deps);
// Resolve strings marked as javascript literals to objects
if (!(data.evals instanceof Array)) data.evals = [data.evals];
for (var i = 0; data.evals && i < data.evals.length; i++) {
@@ -512,7 +513,6 @@
elementData(el, "init_result", result);
}
}
- Shiny.renderDependencies(data.deps);
bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
};
@@ -565,7 +565,10 @@
}
if (binding.resize) {
- var lastSize = {};
+ var lastSize = {
+ w: sizeObj ? sizeObj.getWidth() : el.offsetWidth,
+ h: sizeObj ? sizeObj.getHeight() : el.offsetHeight
+ };
var resizeHandler = function(e) {
var size = {
w: sizeObj ? sizeObj.getWidth() : el.offsetWidth,
diff --git a/docs/articles/interactive_plots_files/plotly-binding-4.6.0/plotly.js b/docs/articles/interactive_plots_files/plotly-binding-4.6.0/plotly.js
deleted file mode 100644
index e8e065ee..00000000
--- a/docs/articles/interactive_plots_files/plotly-binding-4.6.0/plotly.js
+++ /dev/null
@@ -1,890 +0,0 @@
-
-HTMLWidgets.widget({
- name: "plotly",
- type: "output",
-
- initialize: function(el, width, height) {
- // when upgrading plotly.js,
- // uncomment this console.log(), then do `load_all(); plot_ly()`
- // open in chrome, right-click on console output: "save-as" -> "schema.json"
- // Schema <- jsonlite::fromJSON("~/Downloads/schema.json")
- // devtools::use_data(Schema, overwrite = T, internal = T)
- // console.log(JSON.stringify(Plotly.PlotSchema.get()));
-
- return {
- // Push JavaScript closures onto this list, and renderValue
- // will pop them off and run them one at a time the next
- // time it runs. Use this to dispose of e.g. old event
- // registrations.
- onNextRender: []
- };
-
- },
-
- resize: function(el, width, height, instance) {
- if (instance.autosize) {
- var width = instance.width || width;
- var height = instance.height || height;
- Plotly.relayout(el.id, {width: width, height: height});
- }
- },
-
- renderValue: function(el, x, instance) {
-
- // Release previously registered crosstalk event listeners
- while (instance.onNextRender.length > 0) {
- instance.onNextRender.pop()();
- }
-
- var shinyMode;
- if (typeof(window) !== "undefined") {
- // make sure plots don't get created outside the network
- window.PLOTLYENV = window.PLOTLYENV || {};
- window.PLOTLYENV.BASE_URL = x.base_url;
- shinyMode = !!window.Shiny;
- }
-
- var graphDiv = document.getElementById(el.id);
-
- // TODO: move the control panel injection strategy inside here...
- HTMLWidgets.addPostRenderHandler(function() {
-
- // lower the z-index of the modebar to prevent it from highjacking hover
- // (TODO: do this via CSS?)
- // https://github.com/ropensci/plotly/issues/956
- // https://www.w3schools.com/jsref/prop_style_zindex.asp
- var modebars = document.querySelectorAll(".js-plotly-plot .plotly .modebar");
- for (var i = 0; i < modebars.length; i++) {
- modebars[i].style.zIndex = 1;
- }
- });
-
- // inject a "control panel" holding selectize/dynamic color widget(s)
- if (x.selectize || x.highlight.dynamic && !instance.plotly) {
- var flex = document.createElement("div");
- flex.class = "plotly-crosstalk-control-panel";
- flex.style = "display: flex; flex-wrap: wrap";
-
- // inject the colourpicker HTML container into the flexbox
- if (x.highlight.dynamic) {
- var pickerDiv = document.createElement("div");
-
- var pickerInput = document.createElement("input");
- pickerInput.id = el.id + "-colourpicker";
- pickerInput.placeholder = "asdasd";
-
- var pickerLabel = document.createElement("label");
- pickerLabel.for = pickerInput.id;
- pickerLabel.innerHTML = "Brush color ";
-
- pickerDiv.appendChild(pickerLabel);
- pickerDiv.appendChild(pickerInput);
- flex.appendChild(pickerDiv);
- }
-
- // inject selectize HTML containers (one for every crosstalk group)
- if (x.selectize) {
- var ids = Object.keys(x.selectize);
-
- for (var i = 0; i < ids.length; i++) {
- var container = document.createElement("div");
- container.id = ids[i];
- container.style = "width: 80%; height: 10%";
- container.class = "form-group crosstalk-input-plotly-highlight";
-
- var label = document.createElement("label");
- label.for = ids[i];
- label.innerHTML = x.selectize[ids[i]].group;
- label.class = "control-label";
-
- var selectDiv = document.createElement("div");
- var select = document.createElement("select");
- select.multiple = true;
-
- selectDiv.appendChild(select);
- container.appendChild(label);
- container.appendChild(selectDiv);
- flex.appendChild(container);
- }
- }
-
- // finally, insert the flexbox inside the htmlwidget container,
- // but before the plotly graph div
- graphDiv.parentElement.insertBefore(flex, graphDiv);
-
- if (x.highlight.dynamic) {
- var picker = $("#" + pickerInput.id);
- var colors = x.highlight.color || [];
- // TODO: let users specify options?
- var opts = {
- value: colors[0],
- showColour: "both",
- palette: "limited",
- allowedCols: colors.join(" "),
- width: "20%",
- height: "10%"
- };
- picker.colourpicker({changeDelay: 0});
- picker.colourpicker("settings", opts);
- picker.colourpicker("value", opts.value);
- // inform crosstalk about a change in the current selection colour
- var grps = x.highlight.ctGroups || [];
- for (var i = 0; i < grps.length; i++) {
- crosstalk.group(grps[i]).var('plotlySelectionColour')
- .set(picker.colourpicker('value'));
- }
- picker.on("change", function() {
- for (var i = 0; i < grps.length; i++) {
- crosstalk.group(grps[i]).var('plotlySelectionColour')
- .set(picker.colourpicker('value'));
- }
- });
- }
- }
-
- // remove "sendDataToCloud", unless user has specified they want it
- var config = x.config || {};
- if (!config.cloud) {
- x.config.modeBarButtonsToRemove = config.modeBarButtonsToRemove || [];
- x.config.modeBarButtonsToRemove.push("sendDataToCloud");
- }
-
- // if no plot exists yet, create one with a particular configuration
- if (!instance.plotly) {
-
- var plot = Plotly.plot(graphDiv, x);
- instance.plotly = true;
- instance.autosize = x.layout.autosize || true;
- instance.width = x.layout.width;
- instance.height = x.layout.height;
-
- } else {
-
- // this is essentially equivalent to Plotly.newPlot(), but avoids creating
- // a new webgl context
- // https://github.com/plotly/plotly.js/blob/2b24f9def901831e61282076cf3f835598d56f0e/src/plot_api/plot_api.js#L531-L532
-
- // TODO: restore crosstalk selections?
- Plotly.purge(graphDiv);
- // TODO: why is this necessary to get crosstalk working?
- graphDiv.data = undefined;
- graphDiv.layout = undefined;
- var plot = Plotly.plot(graphDiv, x);
-
- }
-
- // Attach attributes (e.g., "key", "z") to plotly event data
- function eventDataWithKey(eventData) {
- if (eventData === undefined || !eventData.hasOwnProperty("points")) {
- return null;
- }
- return eventData.points.map(function(pt) {
- var obj = {
- curveNumber: pt.curveNumber,
- pointNumber: pt.pointNumber,
- x: pt.x,
- y: pt.y
- };
- /*
- TL;DR: (I think) we have to select the graph div (again) to attach keys...
-
- Why? Remember that crosstalk will dynamically add/delete traces
- (see traceManager.prototype.updateSelection() below)
- For this reason, we can't simply grab keys from x.data (like we did previously)
- Moreover, we can't use _fullData, since that doesn't include
- unofficial attributes. It's true that click/hover events fire with
- pt.data, but drag events don't...
- */
- var gd = document.getElementById(el.id);
- var trace = gd.data[pt.curveNumber];
-
- // Add other attributes here, if desired
- if (!trace._isSimpleKey) {
- var attrsToAttach = ["key", "z"];
- } else {
- // simple keys fire the whole key
- obj.key = trace.key;
- var attrsToAttach = ["z"];
- }
-
- for (var i = 0; i < attrsToAttach.length; i++) {
- var attr = trace[attrsToAttach[i]];
- if (Array.isArray(attr)) {
- // pointNumber can be an array (e.g., heatmaps)
- // TODO: can pointNumber be 3D?
- obj[attrsToAttach[i]] = typeof pt.pointNumber === "number" ?
- attr[pt.pointNumber] : attr[pt.pointNumber[0]][pt.pointNumber[1]];
- }
- }
- return obj;
- });
- }
-
- // send user input event data to shiny
- if (shinyMode) {
- // https://plot.ly/javascript/zoom-events/
- graphDiv.on('plotly_relayout', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_relayout-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_hover', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_hover-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_click', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_click-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_selected', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_selected-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_unhover', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_hover-" + x.source, null);
- });
- graphDiv.on('plotly_doubleclick', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_click-" + x.source, null);
- });
- // 'plotly_deselect' is code for doubleclick when in select mode
- graphDiv.on('plotly_deselect', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_selected-" + x.source, null);
- Shiny.onInputChange(".clientValue-plotly_click-" + x.source, null);
- });
- }
-
-
- // Given an array of {curveNumber: x, pointNumber: y} objects,
- // return a hash of {
- // set1: {value: [key1, key2, ...], _isSimpleKey: false},
- // set2: {value: [key3, key4, ...], _isSimpleKey: false}
- // }
- function pointsToKeys(points) {
- var keysBySet = {};
- for (var i = 0; i < points.length; i++) {
-
- var trace = graphDiv.data[points[i].curveNumber];
- if (!trace.key || !trace.set) {
- continue;
- }
-
- // selecting a point of a "simple" trace means: select the
- // entire key attached to this trace, which is useful for,
- // say clicking on a fitted line to select corresponding observations
- if (trace._isSimpleKey) {
- keysBySet[trace.set] = {value: trace.key, _isSimpleKey: true};
- // TODO: could this be made more efficient by looping at the trace level first?
- continue;
- }
-
- // set defaults for this key set
- keysBySet[trace.set] = keysBySet[trace.set] ||
- {value: [], _isSimpleKey: false};
-
- // the key for this point (could be "nested" -- i.e. a 2D array)
- var key = trace.key[points[i].pointNumber];
- if (trace._isNestedKey) {
- // TODO: is this faster than pushing?
- keysBySet[trace.set].value = keysBySet[trace.set].value.concat(key);
- } else {
- keysBySet[trace.set].value.push(key);
- }
-
- }
- return keysBySet;
- }
-
-
- x.highlight.color = x.highlight.color || [];
- // make sure highlight color is an array
- if (!Array.isArray(x.highlight.color)) {
- x.highlight.color = [x.highlight.color];
- }
-
- var traceManager = new TraceManager(graphDiv, x.highlight);
-
- // Gather all *unique* sets.
- var allSets = [];
- for (var curveIdx = 0; curveIdx < x.data.length; curveIdx++) {
- var newSet = x.data[curveIdx].set;
- if (newSet) {
- if (allSets.indexOf(newSet) === -1) {
- allSets.push(newSet);
- }
- }
- }
-
- if (allSets.length > 0) {
-
- // Set a crosstalk variable selection value, triggering an update
- graphDiv.on(x.highlight.on, function turnOn(e) {
- if (e) {
- var selectedKeys = pointsToKeys(e.points);
- // Keys are group names, values are array of selected keys from group.
- for (var set in selectedKeys) {
- if (selectedKeys.hasOwnProperty(set)) {
- crosstalk.group(set).var("selection")
- .set(selectedKeys[set].value, {sender: el});
- }
- }
-
- }
- });
-
- graphDiv.on(x.highlight.off, function turnOff(e) {
- // remove any visual clues
- removeBrush(el);
- // remove any selection history
- crosstalk.var("plotlySelectionHistory").set(null);
- // trigger the actual removal of selection traces
- for (var i = 0; i < allSets.length; i++) {
- crosstalk.group(allSets[i]).var("selection").set(null, {sender: el});
- }
- });
-
-
- for (var i = 0; i < allSets.length; i++) {
- (function() {
- var set = allSets[i];
- var grp = crosstalk.group(set);
-
- // Create a selectize widget for each group
- if (x.selectize) {
- var selectizeID = Object.keys(x.selectize)[i];
- var items = x.selectize[selectizeID].items;
- var first = [{value: "", label: "(All)"}];
- var opts = {
- options: first.concat(items),
- searchField: "label",
- valueField: "value",
- labelField: "label",
- maxItems: 50
- };
- var select = $("#" + selectizeID).find("select")[0];
- var selectize = $(select).selectize(opts)[0].selectize;
- // NOTE: this callback is triggered when *directly* altering
- // dropdown items
- selectize.on("change", function() {
- var currentItems = traceManager.groupSelections[set] || [];
- if (!x.highlight.persistent) {
- removeBrush(el);
- for (var i = 0; i < currentItems.length; i++) {
- selectize.removeItem(currentItems[i], true);
- }
- }
- var newItems = selectize.items.filter(function(idx) {
- return currentItems.indexOf(idx) < 0;
- });
- if (newItems.length > 0) {
- traceManager.updateSelection(set, newItems);
- } else {
- // Item has been removed...
- // TODO: this logic won't work for dynamically changing palette
- traceManager.updateSelection(set, null);
- traceManager.updateSelection(set, selectize.items);
- }
- });
- }
-
-
- var crosstalkSelectionChange = function(e) {
-
- // array of "event objects" tracking the selection history
- // this is used to avoid adding redundant selections
- var selectionHistory = crosstalk.var("plotlySelectionHistory").get() || [];
-
- // Construct an event object "defining" the current event.
- var event = {
- receiverID: traceManager.gd.id,
- plotlySelectionColour: crosstalk.group(set).var("plotlySelectionColour").get()
- };
- event[set] = e.value;
- // TODO: is there a smarter way to check object equality?
- if (selectionHistory.length > 0) {
- var ev = JSON.stringify(event);
- for (var i = 0; i < selectionHistory.length; i++) {
- var sel = JSON.stringify(selectionHistory[i]);
- if (sel == ev) {
- return;
- }
- }
- }
-
- // accumulate history for persistent selection
- if (!x.highlight.persistent) {
- selectionHistory = [event];
- } else {
- selectionHistory.push(event);
- }
- crosstalk.var("plotlySelectionHistory").set(selectionHistory);
-
- // e.value is either null, or an array of newly selected values
- traceManager.updateSelection(set, e.value);
- // https://github.com/selectize/selectize.js/blob/master/docs/api.md#methods_items
- if (x.selectize) {
- if (!x.highlight.persistent || e.value === null) {
- selectize.clear(true);
- }
- selectize.addItems(e.value, true);
- selectize.close();
- }
-
- }
-
- grp.var("selection").on("change", crosstalkSelectionChange);
-
-
- grp.var("filter").on("change", function crosstalk_filter_change(e) {
- removeBrush(el);
- traceManager.updateFilter(set, e.value);
- });
-
- })();
- }
- }
- }
-});
-
-/**
- * @param graphDiv The Plotly graph div
- * @param highlight An object with options for updating selection(s)
- */
-function TraceManager(graphDiv, highlight) {
- // The Plotly graph div
- this.gd = graphDiv;
-
- // Preserve the original data.
- // TODO: try using Lib.extendFlat() as done in
- // https://github.com/plotly/plotly.js/pull/1136
- this.origData = JSON.parse(JSON.stringify(graphDiv.data));
-
- // avoid doing this over and over
- this.origOpacity = [];
- for (var i = 0; i < this.origData.length; i++) {
- this.origOpacity[i] = this.origData[i].opacity || 1;
- }
-
- // key: group name, value: null or array of keys representing the
- // most recently received selection for that group.
- this.groupSelections = {};
-
- // selection parameters (e.g., transient versus persistent selection)
- this.highlight = highlight;
-}
-
-TraceManager.prototype.close = function() {
- // TODO: Unhook all event handlers
-};
-
-TraceManager.prototype.updateFilter = function(group, keys) {
-
- if (typeof(keys) === "undefined" || keys === null) {
-
- this.gd.data = JSON.parse(JSON.stringify(this.origData));
-
- } else {
-
- var traces = [];
- for (var i = 0; i < this.origData.length; i++) {
- var trace = this.origData[i];
- if (!trace.key || trace.set !== group) {
- continue;
- }
- var matchFunc = getMatchFunc(trace);
- var matches = matchFunc(trace.key, keys);
-
- if (matches.length > 0) {
- if (!trace._isSimpleKey) {
- // subsetArrayAttrs doesn't mutate trace (it makes a modified clone)
- trace = subsetArrayAttrs(trace, matches);
- }
- traces.push(trace);
- }
- }
- }
-
- this.gd.data = traces;
- Plotly.redraw(this.gd);
-
- // NOTE: we purposely do _not_ restore selection(s), since on filter,
- // axis likely will update, changing the pixel -> data mapping, leading
- // to a likely mismatch in the brush outline and highlighted marks
-
-};
-
-TraceManager.prototype.updateSelection = function(group, keys) {
-
- if (keys !== null && !Array.isArray(keys)) {
- throw new Error("Invalid keys argument; null or array expected");
- }
-
- // if selection has been cleared, or if this is transient
- // selection, delete the "selection traces"
- var nNewTraces = this.gd.data.length - this.origData.length;
- if (keys === null || !this.highlight.persistent && nNewTraces > 0) {
- var tracesToRemove = [];
- for (var i = this.origData.length; i < this.gd.data.length; i++) {
- tracesToRemove.push(i);
- }
- Plotly.deleteTraces(this.gd, tracesToRemove);
- this.groupSelections[group] = keys;
- } else {
- // add to the groupSelection, rather than overwriting it
- // TODO: can this be removed?
- this.groupSelections[group] = this.groupSelections[group] || [];
- for (var i = 0; i < keys.length; i++) {
- var k = keys[i];
- if (this.groupSelections[group].indexOf(k) < 0) {
- this.groupSelections[group].push(k);
- }
- }
- }
-
- if (keys === null) {
-
- Plotly.restyle(this.gd, {"opacity": this.origOpacity});
-
- } else if (keys.length >= 1) {
-
- // placeholder for new "selection traces"
- var traces = [];
- // this variable is set in R/highlight.R
- var selectionColour = crosstalk.group(group).var("plotlySelectionColour").get() ||
- this.highlight.color[0];
-
- // selection brush attributes
- var selectAttrs = Object.keys(this.highlight.selected);
-
- for (var i = 0; i < this.origData.length; i++) {
- // TODO: try using Lib.extendFlat() as done in
- // https://github.com/plotly/plotly.js/pull/1136
- var trace = JSON.parse(JSON.stringify(this.gd.data[i]));
- if (!trace.key || trace.set !== group) {
- continue;
- }
- // Get sorted array of matching indices in trace.key
- var matchFunc = getMatchFunc(trace);
- var matches = matchFunc(trace.key, keys);
-
- if (matches.length > 0) {
- // If this is a "simple" key, that means select the entire trace
- if (!trace._isSimpleKey) {
- trace = subsetArrayAttrs(trace, matches);
- }
- // Apply selection brush attributes (supplied from R)
- // TODO: it would be neat to have a dropdown to dynamically specify these
- for (var j = 0; j < selectAttrs.length; j++) {
- var attr = selectAttrs[j];
- trace[attr] = this.highlight.selected[attr];
- }
-
- // if it is defined, override color with the "dynamic brush color""
- var d = this.gd._fullData[i];
- if (d.marker) {
- trace.marker = d.marker;
- trace.marker.color = selectionColour || trace.marker.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.marker || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.marker[attrs[j]] = selected[attrs[j]];
- }
- }
-
- if (d.line) {
- trace.line = d.line;
- trace.line.color = selectionColour || trace.line.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.line || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.line[attrs[j]] = selected[attrs[j]];
- }
- }
-
- if (d.textfont) {
- trace.textfont = d.textfont;
- trace.textfont.color = selectionColour || trace.textfont.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.textfont || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.textfont[attrs[j]] = selected[attrs[j]];
- }
- }
- // attach a sensible name/legendgroup
- trace.name = trace.name || keys.join("
");
- trace.legendgroup = trace.legendgroup || keys.join("
");
-
- // keep track of mapping between this new trace and the trace it targets
- // (necessary for updating frames to reflect the selection traces)
- trace._originalIndex = i;
- trace._newIndex = this.gd._fullData.length + traces.length;
- traces.push(trace);
- }
- }
-
- if (traces.length > 0) {
-
- Plotly.addTraces(this.gd, traces).then(function(gd) {
- // incrementally add selection traces to frames
- // (this is heavily inspired by Plotly.Plots.modifyFrames()
- // in src/plots/plots.js)
- var _hash = gd._transitionData._frameHash;
- var _frames = gd._transitionData._frames || [];
-
- for (var i = 0; i < _frames.length; i++) {
-
- // add to _frames[i].traces *if* this frame references selected trace(s)
- var newIndices = [];
- for (var j = 0; j < traces.length; j++) {
- var tr = traces[j];
- if (_frames[i].traces.indexOf(tr._originalIndex) > -1) {
- newIndices.push(tr._newIndex);
- _frames[i].traces.push(tr._newIndex);
- }
- }
-
- // nothing to do...
- if (newIndices.length === 0) {
- continue;
- }
-
- var ctr = 0;
- var nFrameTraces = _frames[i].data.length;
-
- for (var j = 0; j < nFrameTraces; j++) {
- var frameTrace = _frames[i].data[j];
- if (!frameTrace.key || frameTrace.set !== group) {
- continue;
- }
-
- var matchFunc = getMatchFunc(frameTrace);
- var matches = matchFunc(frameTrace.key, keys);
-
- if (matches.length > 0) {
- if (!trace._isSimpleKey) {
- frameTrace = subsetArrayAttrs(frameTrace, matches);
- }
- var d = gd._fullData[newIndices[ctr]];
- if (d.marker) {
- frameTrace.marker = d.marker;
- }
- if (d.line) {
- frameTrace.line = d.line;
- }
- if (d.textfont) {
- frameTrace.textfont = d.textfont;
- }
- ctr = ctr + 1;
- _frames[i].data.push(frameTrace);
- }
- }
-
- // update gd._transitionData._frameHash
- _hash[_frames[i].name] = _frames[i];
- }
-
- });
-
- // dim traces that have a set matching the set of selection sets
- var tracesToDim = [],
- opacities = [],
- sets = Object.keys(this.groupSelections),
- n = this.origData.length;
-
- for (var i = 0; i < n; i++) {
- var opacity = this.origOpacity[i] || 1;
- // have we already dimmed this trace? Or is this even worth doing?
- if (opacity !== this.gd._fullData[i].opacity || this.highlight.opacityDim === 1) {
- continue;
- }
- // is this set an element of the set of selection sets?
- var matches = findMatches(sets, [this.gd.data[i].set]);
- if (matches.length) {
- tracesToDim.push(i);
- opacities.push(opacity * this.highlight.opacityDim);
- }
- }
-
- if (tracesToDim.length > 0) {
- Plotly.restyle(this.gd, {"opacity": opacities}, tracesToDim);
- }
-
- }
-
- }
-};
-
-/*
-Note: in all of these match functions, we assume needleSet (i.e. the selected keys)
-is a 1D (or flat) array. The real difference is the meaning of haystack.
-findMatches() does the usual thing you'd expect for
-linked brushing on a scatterplot matrix. findSimpleMatches() returns a match iff
-haystack is a subset of the needleSet. findNestedMatches() returns
-*/
-
-function getMatchFunc(trace) {
- return (trace._isNestedKey) ? findNestedMatches :
- (trace._isSimpleKey) ? findSimpleMatches : findMatches;
-}
-
-// find matches for "flat" keys
-function findMatches(haystack, needleSet) {
- var matches = [];
- haystack.forEach(function(obj, i) {
- if (obj === null || needleSet.indexOf(obj) >= 0) {
- matches.push(i);
- }
- });
- return matches;
-}
-
-// find matches for "simple" keys
-function findSimpleMatches(haystack, needleSet) {
- var match = haystack.every(function(val) {
- return val === null || needleSet.indexOf(val) >= 0;
- });
- // yes, this doesn't make much sense other than conforming
- // to the output type of the other match functions
- return (match) ? [0] : []
-}
-
-// find matches for a "nested" haystack (2D arrays)
-function findNestedMatches(haystack, needleSet) {
- var matches = [];
- for (var i = 0; i < haystack.length; i++) {
- var hay = haystack[i];
- var match = hay.every(function(val) {
- return val === null || needleSet.indexOf(val) >= 0;
- });
- if (match) {
- matches.push(i);
- }
- }
- return matches;
-}
-
-function isPlainObject(obj) {
- return (
- Object.prototype.toString.call(obj) === '[object Object]' &&
- Object.getPrototypeOf(obj) === Object.prototype
- );
-}
-
-function subsetArrayAttrs(obj, indices) {
- var newObj = {};
- Object.keys(obj).forEach(function(k) {
- var val = obj[k];
-
- if (k.charAt(0) === "_") {
- newObj[k] = val;
- } else if (k === "transforms" && Array.isArray(val)) {
- newObj[k] = val.map(function(transform) {
- return subsetArrayAttrs(transform, indices);
- });
- } else if (k === "colorscale" && Array.isArray(val)) {
- newObj[k] = val;
- } else if (isPlainObject(val)) {
- newObj[k] = subsetArrayAttrs(val, indices);
- } else if (Array.isArray(val)) {
- newObj[k] = subsetArray(val, indices);
- } else {
- newObj[k] = val;
- }
- });
- return newObj;
-}
-
-function subsetArray(arr, indices) {
- var result = [];
- for (var i = 0; i < indices.length; i++) {
- result.push(arr[indices[i]]);
- }
- return result;
-}
-
-// Convenience function for removing plotly's brush
-function removeBrush(el) {
- var outlines = el.querySelectorAll(".select-outline");
- for (var i = 0; i < outlines.length; i++) {
- outlines[i].remove();
- }
-}
-
-/* Currently not used
-
-// Given an array of strings, return an object that hierarchically
-// represents the corresponding curves/points.
-//
-// For example, the following data:
-//
-// [
-// {curveNumber: 0, pointNumber: 1},
-// {curveNumber: 0, pointNumber: 2},
-// {curveNumber: 2, pointNumber: 1}
-// ]
-//
-// would be returned as:
-// {
-// "0": [1, 2],
-// "2": [1]
-// }
-
-// # Begin Crosstalk support
-
-// ## Crosstalk point/key translation functions
-//
-// Plotly.js uses curveNumber/pointNumber addressing to refer
-// to data points (i.e. when plotly_selected is received). We
-// prefer to let the R user use key-based addressing, where
-// a string is used that uniquely identifies a data point (we
-// can also use row numbers in a pinch).
-//
-// The pointsToKeys and keysToPoints functions let you convert
-// between the two schemes.
-
-// Combine the name of a set and key into a single string, suitable for
-// using as a keyCache key.
-function joinSetAndKey(set, key) {
- return set + "\n" + key;
-}
-
-// To allow translation from sets+keys to points in O(1) time, we
-// make a cache that lets us map keys to objects with
-// {curveNumber, pointNumber} properties.
-var keyCache = {};
-for (var i = 0; i < x.data.length; i++) {
- var trace = x.data[i];
- if (!trace.key || !trace.set) {
- continue;
- }
- for (var j = 0; j < trace.key.length; j++) {
- var nm = joinSetAndKey(trace.set, trace.key[j]);
- keyCache[nm] = {curveNumber: i, pointNumber: j};
- }
-}
-
-function keysToPoints(set, keys) {
- var curves = {};
- for (var i = 0; i < keys.length; i++) {
- var pt = keyCache[joinSetAndKey(set, keys[i])];
- if (!pt) {
- throw new Error("Unknown key " + keys[i]);
- }
- curves[pt.curveNumber] = curves[pt.curveNumber] || [];
- curves[pt.curveNumber].push(pt.pointNumber);
- }
- return curves;
-}
-*/
diff --git a/docs/articles/interactive_plots_files/plotly-binding-4.7.0/plotly.js b/docs/articles/interactive_plots_files/plotly-binding-4.7.0/plotly.js
deleted file mode 100644
index 07d9ce21..00000000
--- a/docs/articles/interactive_plots_files/plotly-binding-4.7.0/plotly.js
+++ /dev/null
@@ -1,874 +0,0 @@
-
-HTMLWidgets.widget({
- name: "plotly",
- type: "output",
-
- initialize: function(el, width, height) {
- // when upgrading plotly.js,
- // uncomment this console.log(), then do `load_all(); plot_ly()`
- // open in chrome, right-click on console output: "save-as" -> "schema.json"
- // Schema <- jsonlite::fromJSON("~/Downloads/schema.json")
- // devtools::use_data(Schema, overwrite = T, internal = T)
- // console.log(JSON.stringify(Plotly.PlotSchema.get()));
-
- return {};
- },
-
- resize: function(el, width, height, instance) {
- if (instance.autosize) {
- var width = instance.width || width;
- var height = instance.height || height;
- Plotly.relayout(el.id, {width: width, height: height});
- }
- },
-
- renderValue: function(el, x, instance) {
-
- var shinyMode;
- if (typeof(window) !== "undefined") {
- // make sure plots don't get created outside the network
- window.PLOTLYENV = window.PLOTLYENV || {};
- window.PLOTLYENV.BASE_URL = x.base_url;
- shinyMode = !!window.Shiny;
- }
-
- var graphDiv = document.getElementById(el.id);
-
- // TODO: move the control panel injection strategy inside here...
- HTMLWidgets.addPostRenderHandler(function() {
-
- // lower the z-index of the modebar to prevent it from highjacking hover
- // (TODO: do this via CSS?)
- // https://github.com/ropensci/plotly/issues/956
- // https://www.w3schools.com/jsref/prop_style_zindex.asp
- var modebars = document.querySelectorAll(".js-plotly-plot .plotly .modebar");
- for (var i = 0; i < modebars.length; i++) {
- modebars[i].style.zIndex = 1;
- }
- });
-
- // inject a "control panel" holding selectize/dynamic color widget(s)
- if (x.selectize || x.highlight.dynamic && !instance.plotly) {
- var flex = document.createElement("div");
- flex.class = "plotly-crosstalk-control-panel";
- flex.style = "display: flex; flex-wrap: wrap";
-
- // inject the colourpicker HTML container into the flexbox
- if (x.highlight.dynamic) {
- var pickerDiv = document.createElement("div");
-
- var pickerInput = document.createElement("input");
- pickerInput.id = el.id + "-colourpicker";
- pickerInput.placeholder = "asdasd";
-
- var pickerLabel = document.createElement("label");
- pickerLabel.for = pickerInput.id;
- pickerLabel.innerHTML = "Brush color ";
-
- pickerDiv.appendChild(pickerLabel);
- pickerDiv.appendChild(pickerInput);
- flex.appendChild(pickerDiv);
- }
-
- // inject selectize HTML containers (one for every crosstalk group)
- if (x.selectize) {
- var ids = Object.keys(x.selectize);
-
- for (var i = 0; i < ids.length; i++) {
- var container = document.createElement("div");
- container.id = ids[i];
- container.style = "width: 80%; height: 10%";
- container.class = "form-group crosstalk-input-plotly-highlight";
-
- var label = document.createElement("label");
- label.for = ids[i];
- label.innerHTML = x.selectize[ids[i]].group;
- label.class = "control-label";
-
- var selectDiv = document.createElement("div");
- var select = document.createElement("select");
- select.multiple = true;
-
- selectDiv.appendChild(select);
- container.appendChild(label);
- container.appendChild(selectDiv);
- flex.appendChild(container);
- }
- }
-
- // finally, insert the flexbox inside the htmlwidget container,
- // but before the plotly graph div
- graphDiv.parentElement.insertBefore(flex, graphDiv);
-
- if (x.highlight.dynamic) {
- var picker = $("#" + pickerInput.id);
- var colors = x.highlight.color || [];
- // TODO: let users specify options?
- var opts = {
- value: colors[0],
- showColour: "both",
- palette: "limited",
- allowedCols: colors.join(" "),
- width: "20%",
- height: "10%"
- };
- picker.colourpicker({changeDelay: 0});
- picker.colourpicker("settings", opts);
- picker.colourpicker("value", opts.value);
- // inform crosstalk about a change in the current selection colour
- var grps = x.highlight.ctGroups || [];
- for (var i = 0; i < grps.length; i++) {
- crosstalk.group(grps[i]).var('plotlySelectionColour')
- .set(picker.colourpicker('value'));
- }
- picker.on("change", function() {
- for (var i = 0; i < grps.length; i++) {
- crosstalk.group(grps[i]).var('plotlySelectionColour')
- .set(picker.colourpicker('value'));
- }
- });
- }
- }
-
- // remove "sendDataToCloud", unless user has specified they want it
- x.config = x.config || {};
- if (!x.config.cloud) {
- x.config.modeBarButtonsToRemove = x.config.modeBarButtonsToRemove || [];
- x.config.modeBarButtonsToRemove.push("sendDataToCloud");
- }
-
- // if no plot exists yet, create one with a particular configuration
- if (!instance.plotly) {
-
- var plot = Plotly.plot(graphDiv, x);
- instance.plotly = true;
- instance.autosize = x.layout.autosize || true;
- instance.width = x.layout.width;
- instance.height = x.layout.height;
-
- } else {
-
- // this is essentially equivalent to Plotly.newPlot(), but avoids creating
- // a new webgl context
- // https://github.com/plotly/plotly.js/blob/2b24f9def901831e61282076cf3f835598d56f0e/src/plot_api/plot_api.js#L531-L532
-
- // TODO: restore crosstalk selections?
- Plotly.purge(graphDiv);
- // TODO: why is this necessary to get crosstalk working?
- graphDiv.data = undefined;
- graphDiv.layout = undefined;
- var plot = Plotly.plot(graphDiv, x);
-
- }
-
- // Attach attributes (e.g., "key", "z") to plotly event data
- function eventDataWithKey(eventData) {
- if (eventData === undefined || !eventData.hasOwnProperty("points")) {
- return null;
- }
- return eventData.points.map(function(pt) {
- var obj = {
- curveNumber: pt.curveNumber,
- pointNumber: pt.pointNumber,
- x: pt.x,
- y: pt.y
- };
- /*
- TL;DR: (I think) we have to select the graph div (again) to attach keys...
-
- Why? Remember that crosstalk will dynamically add/delete traces
- (see traceManager.prototype.updateSelection() below)
- For this reason, we can't simply grab keys from x.data (like we did previously)
- Moreover, we can't use _fullData, since that doesn't include
- unofficial attributes. It's true that click/hover events fire with
- pt.data, but drag events don't...
- */
- var gd = document.getElementById(el.id);
- var trace = gd.data[pt.curveNumber];
-
- // Add other attributes here, if desired
- if (!trace._isSimpleKey) {
- var attrsToAttach = ["key", "z"];
- } else {
- // simple keys fire the whole key
- obj.key = trace.key;
- var attrsToAttach = ["z"];
- }
-
- for (var i = 0; i < attrsToAttach.length; i++) {
- var attr = trace[attrsToAttach[i]];
- if (Array.isArray(attr)) {
- // pointNumber can be an array (e.g., heatmaps)
- // TODO: can pointNumber be 3D?
- obj[attrsToAttach[i]] = typeof pt.pointNumber === "number" ?
- attr[pt.pointNumber] : attr[pt.pointNumber[0]][pt.pointNumber[1]];
- }
- }
- return obj;
- });
- }
-
- // send user input event data to shiny
- if (shinyMode) {
- // https://plot.ly/javascript/zoom-events/
- graphDiv.on('plotly_relayout', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_relayout-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_hover', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_hover-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_click', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_click-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_selected', function(d) {
- Shiny.onInputChange(
- ".clientValue-plotly_selected-" + x.source,
- JSON.stringify(eventDataWithKey(d))
- );
- });
- graphDiv.on('plotly_unhover', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_hover-" + x.source, null);
- });
- graphDiv.on('plotly_doubleclick', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_click-" + x.source, null);
- });
- // 'plotly_deselect' is code for doubleclick when in select mode
- graphDiv.on('plotly_deselect', function(eventData) {
- Shiny.onInputChange(".clientValue-plotly_selected-" + x.source, null);
- Shiny.onInputChange(".clientValue-plotly_click-" + x.source, null);
- });
- }
-
-
- // Given an array of {curveNumber: x, pointNumber: y} objects,
- // return a hash of {
- // set1: {value: [key1, key2, ...], _isSimpleKey: false},
- // set2: {value: [key3, key4, ...], _isSimpleKey: false}
- // }
- function pointsToKeys(points) {
- var keysBySet = {};
- for (var i = 0; i < points.length; i++) {
-
- var trace = graphDiv.data[points[i].curveNumber];
- if (!trace.key || !trace.set) {
- continue;
- }
-
- // set defaults for this keySet
- // note that we don't track the nested property (yet) since we always
- // emit the union -- http://cpsievert.github.io/talks/20161212b/#21
- keysBySet[trace.set] = keysBySet[trace.set] || {
- value: [],
- _isSimpleKey: trace._isSimpleKey
- };
-
- // selecting a point of a "simple" trace means: select the
- // entire key attached to this trace, which is useful for,
- // say clicking on a fitted line to select corresponding observations
- var key = trace._isSimpleKey ? trace.key : trace.key[points[i].pointNumber];
- // http://stackoverflow.com/questions/10865025/merge-flatten-an-array-of-arrays-in-javascript
- var keyFlat = trace._isNestedKey ? [].concat.apply([], key) : key;
-
- // TODO: better to only add new values?
- keysBySet[trace.set].value = keysBySet[trace.set].value.concat(keyFlat);
- }
-
- return keysBySet;
- }
-
-
- x.highlight.color = x.highlight.color || [];
- // make sure highlight color is an array
- if (!Array.isArray(x.highlight.color)) {
- x.highlight.color = [x.highlight.color];
- }
-
- var traceManager = new TraceManager(graphDiv, x.highlight);
-
- // Gather all *unique* sets.
- var allSets = [];
- for (var curveIdx = 0; curveIdx < x.data.length; curveIdx++) {
- var newSet = x.data[curveIdx].set;
- if (newSet) {
- if (allSets.indexOf(newSet) === -1) {
- allSets.push(newSet);
- }
- }
- }
-
- // register event listeners for all sets
- for (var i = 0; i < allSets.length; i++) {
-
- var set = allSets[i];
- var selection = new crosstalk.SelectionHandle(set);
- var filter = new crosstalk.FilterHandle(set);
-
- var filterChange = function(e) {
- removeBrush(el);
- traceManager.updateFilter(set, e.value);
- };
- filter.on("change", filterChange);
-
-
- var selectionChange = function(e) {
-
- // array of "event objects" tracking the selection history
- // this is used to avoid adding redundant selections
- var selectionHistory = crosstalk.var("plotlySelectionHistory").get() || [];
-
- // Construct an event object "defining" the current event.
- var event = {
- receiverID: traceManager.gd.id,
- plotlySelectionColour: crosstalk.group(set).var("plotlySelectionColour").get()
- };
- event[set] = e.value;
- // TODO: is there a smarter way to check object equality?
- if (selectionHistory.length > 0) {
- var ev = JSON.stringify(event);
- for (var i = 0; i < selectionHistory.length; i++) {
- var sel = JSON.stringify(selectionHistory[i]);
- if (sel == ev) {
- return;
- }
- }
- }
-
- // accumulate history for persistent selection
- if (!x.highlight.persistent) {
- selectionHistory = [event];
- } else {
- selectionHistory.push(event);
- }
- crosstalk.var("plotlySelectionHistory").set(selectionHistory);
-
- // do the actual updating of traces, frames, and the selectize widget
- traceManager.updateSelection(set, e.value);
- // https://github.com/selectize/selectize.js/blob/master/docs/api.md#methods_items
- if (x.selectize) {
- if (!x.highlight.persistent || e.value === null) {
- selectize.clear(true);
- }
- selectize.addItems(e.value, true);
- selectize.close();
- }
- }
- selection.on("change", selectionChange);
-
- // Set a crosstalk variable selection value, triggering an update
- graphDiv.on(x.highlight.on, function turnOn(e) {
- if (e) {
- var selectedKeys = pointsToKeys(e.points);
- // Keys are group names, values are array of selected keys from group.
- for (var set in selectedKeys) {
- if (selectedKeys.hasOwnProperty(set)) {
- selection.set(selectedKeys[set].value, {sender: el});
- }
- }
- }
- });
-
- graphDiv.on(x.highlight.off, function turnOff(e) {
- // remove any visual clues
- removeBrush(el);
- // remove any selection history
- crosstalk.var("plotlySelectionHistory").set(null);
- // trigger the actual removal of selection traces
- selection.set(null, {sender: el});
- });
-
- // register a callback for selectize so that there is bi-directional
- // communication between the widget and direct manipulation events
- if (x.selectize) {
- var selectizeID = Object.keys(x.selectize)[i];
- var items = x.selectize[selectizeID].items;
- var first = [{value: "", label: "(All)"}];
- var opts = {
- options: first.concat(items),
- searchField: "label",
- valueField: "value",
- labelField: "label",
- maxItems: 50
- };
- var select = $("#" + selectizeID).find("select")[0];
- var selectize = $(select).selectize(opts)[0].selectize;
- // NOTE: this callback is triggered when *directly* altering
- // dropdown items
- selectize.on("change", function() {
- var currentItems = traceManager.groupSelections[set] || [];
- if (!x.highlight.persistent) {
- removeBrush(el);
- for (var i = 0; i < currentItems.length; i++) {
- selectize.removeItem(currentItems[i], true);
- }
- }
- var newItems = selectize.items.filter(function(idx) {
- return currentItems.indexOf(idx) < 0;
- });
- if (newItems.length > 0) {
- traceManager.updateSelection(set, newItems);
- } else {
- // Item has been removed...
- // TODO: this logic won't work for dynamically changing palette
- traceManager.updateSelection(set, null);
- traceManager.updateSelection(set, selectize.items);
- }
- });
- }
-
-
-
-
-
-
-
-
- }
-
- } // end of renderValue
-}); // end of widget definition
-
-/**
- * @param graphDiv The Plotly graph div
- * @param highlight An object with options for updating selection(s)
- */
-function TraceManager(graphDiv, highlight) {
- // The Plotly graph div
- this.gd = graphDiv;
-
- // Preserve the original data.
- // TODO: try using Lib.extendFlat() as done in
- // https://github.com/plotly/plotly.js/pull/1136
- this.origData = JSON.parse(JSON.stringify(graphDiv.data));
-
- // avoid doing this over and over
- this.origOpacity = [];
- for (var i = 0; i < this.origData.length; i++) {
- this.origOpacity[i] = this.origData[i].opacity || 1;
- }
-
- // key: group name, value: null or array of keys representing the
- // most recently received selection for that group.
- this.groupSelections = {};
-
- // selection parameters (e.g., transient versus persistent selection)
- this.highlight = highlight;
-}
-
-TraceManager.prototype.close = function() {
- // TODO: Unhook all event handlers
-};
-
-TraceManager.prototype.updateFilter = function(group, keys) {
-
- if (typeof(keys) === "undefined" || keys === null) {
-
- this.gd.data = JSON.parse(JSON.stringify(this.origData));
-
- } else {
-
- var traces = [];
- for (var i = 0; i < this.origData.length; i++) {
- var trace = this.origData[i];
- if (!trace.key || trace.set !== group) {
- continue;
- }
- var matchFunc = getMatchFunc(trace);
- var matches = matchFunc(trace.key, keys);
-
- if (matches.length > 0) {
- if (!trace._isSimpleKey) {
- // subsetArrayAttrs doesn't mutate trace (it makes a modified clone)
- trace = subsetArrayAttrs(trace, matches);
- }
- traces.push(trace);
- }
- }
- }
-
- this.gd.data = traces;
- Plotly.redraw(this.gd);
-
- // NOTE: we purposely do _not_ restore selection(s), since on filter,
- // axis likely will update, changing the pixel -> data mapping, leading
- // to a likely mismatch in the brush outline and highlighted marks
-
-};
-
-TraceManager.prototype.updateSelection = function(group, keys) {
-
- if (keys !== null && !Array.isArray(keys)) {
- throw new Error("Invalid keys argument; null or array expected");
- }
-
- // if selection has been cleared, or if this is transient
- // selection, delete the "selection traces"
- var nNewTraces = this.gd.data.length - this.origData.length;
- if (keys === null || !this.highlight.persistent && nNewTraces > 0) {
- var tracesToRemove = [];
- for (var i = this.origData.length; i < this.gd.data.length; i++) {
- tracesToRemove.push(i);
- }
- Plotly.deleteTraces(this.gd, tracesToRemove);
- this.groupSelections[group] = keys;
- } else {
- // add to the groupSelection, rather than overwriting it
- // TODO: can this be removed?
- this.groupSelections[group] = this.groupSelections[group] || [];
- for (var i = 0; i < keys.length; i++) {
- var k = keys[i];
- if (this.groupSelections[group].indexOf(k) < 0) {
- this.groupSelections[group].push(k);
- }
- }
- }
-
- if (keys === null) {
-
- Plotly.restyle(this.gd, {"opacity": this.origOpacity});
-
- } else if (keys.length >= 1) {
-
- // placeholder for new "selection traces"
- var traces = [];
- // this variable is set in R/highlight.R
- var selectionColour = crosstalk.group(group).var("plotlySelectionColour").get() ||
- this.highlight.color[0];
-
- // selection brush attributes
- var selectAttrs = Object.keys(this.highlight.selected);
-
- for (var i = 0; i < this.origData.length; i++) {
- // TODO: try using Lib.extendFlat() as done in
- // https://github.com/plotly/plotly.js/pull/1136
- var trace = JSON.parse(JSON.stringify(this.gd.data[i]));
- if (!trace.key || trace.set !== group) {
- continue;
- }
- // Get sorted array of matching indices in trace.key
- var matchFunc = getMatchFunc(trace);
- var matches = matchFunc(trace.key, keys);
-
- if (matches.length > 0) {
- // If this is a "simple" key, that means select the entire trace
- if (!trace._isSimpleKey) {
- trace = subsetArrayAttrs(trace, matches);
- }
- // Apply selection brush attributes (supplied from R)
- // TODO: it would be neat to have a dropdown to dynamically specify these
- for (var j = 0; j < selectAttrs.length; j++) {
- var attr = selectAttrs[j];
- trace[attr] = this.highlight.selected[attr];
- }
-
- // if it is defined, override color with the "dynamic brush color""
- var d = this.gd._fullData[i];
- if (d.marker) {
- trace.marker = d.marker;
- trace.marker.color = selectionColour || trace.marker.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.marker || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.marker[attrs[j]] = selected[attrs[j]];
- }
- }
-
- if (d.line) {
- trace.line = d.line;
- trace.line.color = selectionColour || trace.line.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.line || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.line[attrs[j]] = selected[attrs[j]];
- }
- }
-
- if (d.textfont) {
- trace.textfont = d.textfont;
- trace.textfont.color = selectionColour || trace.textfont.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.textfont || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.textfont[attrs[j]] = selected[attrs[j]];
- }
- }
- // attach a sensible name/legendgroup
- trace.name = trace.name || keys.join("
");
- trace.legendgroup = trace.legendgroup || keys.join("
");
-
- // keep track of mapping between this new trace and the trace it targets
- // (necessary for updating frames to reflect the selection traces)
- trace._originalIndex = i;
- trace._newIndex = this.gd._fullData.length + traces.length;
- traces.push(trace);
- }
- }
-
- if (traces.length > 0) {
-
- Plotly.addTraces(this.gd, traces).then(function(gd) {
- // incrementally add selection traces to frames
- // (this is heavily inspired by Plotly.Plots.modifyFrames()
- // in src/plots/plots.js)
- var _hash = gd._transitionData._frameHash;
- var _frames = gd._transitionData._frames || [];
-
- for (var i = 0; i < _frames.length; i++) {
-
- // add to _frames[i].traces *if* this frame references selected trace(s)
- var newIndices = [];
- for (var j = 0; j < traces.length; j++) {
- var tr = traces[j];
- if (_frames[i].traces.indexOf(tr._originalIndex) > -1) {
- newIndices.push(tr._newIndex);
- _frames[i].traces.push(tr._newIndex);
- }
- }
-
- // nothing to do...
- if (newIndices.length === 0) {
- continue;
- }
-
- var ctr = 0;
- var nFrameTraces = _frames[i].data.length;
-
- for (var j = 0; j < nFrameTraces; j++) {
- var frameTrace = _frames[i].data[j];
- if (!frameTrace.key || frameTrace.set !== group) {
- continue;
- }
-
- var matchFunc = getMatchFunc(frameTrace);
- var matches = matchFunc(frameTrace.key, keys);
-
- if (matches.length > 0) {
- if (!trace._isSimpleKey) {
- frameTrace = subsetArrayAttrs(frameTrace, matches);
- }
- var d = gd._fullData[newIndices[ctr]];
- if (d.marker) {
- frameTrace.marker = d.marker;
- }
- if (d.line) {
- frameTrace.line = d.line;
- }
- if (d.textfont) {
- frameTrace.textfont = d.textfont;
- }
- ctr = ctr + 1;
- _frames[i].data.push(frameTrace);
- }
- }
-
- // update gd._transitionData._frameHash
- _hash[_frames[i].name] = _frames[i];
- }
-
- });
-
- // dim traces that have a set matching the set of selection sets
- var tracesToDim = [],
- opacities = [],
- sets = Object.keys(this.groupSelections),
- n = this.origData.length;
-
- for (var i = 0; i < n; i++) {
- var opacity = this.origOpacity[i] || 1;
- // have we already dimmed this trace? Or is this even worth doing?
- if (opacity !== this.gd._fullData[i].opacity || this.highlight.opacityDim === 1) {
- continue;
- }
- // is this set an element of the set of selection sets?
- var matches = findMatches(sets, [this.gd.data[i].set]);
- if (matches.length) {
- tracesToDim.push(i);
- opacities.push(opacity * this.highlight.opacityDim);
- }
- }
-
- if (tracesToDim.length > 0) {
- Plotly.restyle(this.gd, {"opacity": opacities}, tracesToDim);
- }
-
- }
-
- }
-};
-
-/*
-Note: in all of these match functions, we assume needleSet (i.e. the selected keys)
-is a 1D (or flat) array. The real difference is the meaning of haystack.
-findMatches() does the usual thing you'd expect for
-linked brushing on a scatterplot matrix. findSimpleMatches() returns a match iff
-haystack is a subset of the needleSet. findNestedMatches() returns
-*/
-
-function getMatchFunc(trace) {
- return (trace._isNestedKey) ? findNestedMatches :
- (trace._isSimpleKey) ? findSimpleMatches : findMatches;
-}
-
-// find matches for "flat" keys
-function findMatches(haystack, needleSet) {
- var matches = [];
- haystack.forEach(function(obj, i) {
- if (obj === null || needleSet.indexOf(obj) >= 0) {
- matches.push(i);
- }
- });
- return matches;
-}
-
-// find matches for "simple" keys
-function findSimpleMatches(haystack, needleSet) {
- var match = haystack.every(function(val) {
- return val === null || needleSet.indexOf(val) >= 0;
- });
- // yes, this doesn't make much sense other than conforming
- // to the output type of the other match functions
- return (match) ? [0] : []
-}
-
-// find matches for a "nested" haystack (2D arrays)
-function findNestedMatches(haystack, needleSet) {
- var matches = [];
- for (var i = 0; i < haystack.length; i++) {
- var hay = haystack[i];
- var match = hay.every(function(val) {
- return val === null || needleSet.indexOf(val) >= 0;
- });
- if (match) {
- matches.push(i);
- }
- }
- return matches;
-}
-
-function isPlainObject(obj) {
- return (
- Object.prototype.toString.call(obj) === '[object Object]' &&
- Object.getPrototypeOf(obj) === Object.prototype
- );
-}
-
-function subsetArrayAttrs(obj, indices) {
- var newObj = {};
- Object.keys(obj).forEach(function(k) {
- var val = obj[k];
-
- if (k.charAt(0) === "_") {
- newObj[k] = val;
- } else if (k === "transforms" && Array.isArray(val)) {
- newObj[k] = val.map(function(transform) {
- return subsetArrayAttrs(transform, indices);
- });
- } else if (k === "colorscale" && Array.isArray(val)) {
- newObj[k] = val;
- } else if (isPlainObject(val)) {
- newObj[k] = subsetArrayAttrs(val, indices);
- } else if (Array.isArray(val)) {
- newObj[k] = subsetArray(val, indices);
- } else {
- newObj[k] = val;
- }
- });
- return newObj;
-}
-
-function subsetArray(arr, indices) {
- var result = [];
- for (var i = 0; i < indices.length; i++) {
- result.push(arr[indices[i]]);
- }
- return result;
-}
-
-// Convenience function for removing plotly's brush
-function removeBrush(el) {
- var outlines = el.querySelectorAll(".select-outline");
- for (var i = 0; i < outlines.length; i++) {
- outlines[i].remove();
- }
-}
-
-/* Currently not used
-
-// Given an array of strings, return an object that hierarchically
-// represents the corresponding curves/points.
-//
-// For example, the following data:
-//
-// [
-// {curveNumber: 0, pointNumber: 1},
-// {curveNumber: 0, pointNumber: 2},
-// {curveNumber: 2, pointNumber: 1}
-// ]
-//
-// would be returned as:
-// {
-// "0": [1, 2],
-// "2": [1]
-// }
-
-// # Begin Crosstalk support
-
-// ## Crosstalk point/key translation functions
-//
-// Plotly.js uses curveNumber/pointNumber addressing to refer
-// to data points (i.e. when plotly_selected is received). We
-// prefer to let the R user use key-based addressing, where
-// a string is used that uniquely identifies a data point (we
-// can also use row numbers in a pinch).
-//
-// The pointsToKeys and keysToPoints functions let you convert
-// between the two schemes.
-
-// Combine the name of a set and key into a single string, suitable for
-// using as a keyCache key.
-function joinSetAndKey(set, key) {
- return set + "\n" + key;
-}
-
-// To allow translation from sets+keys to points in O(1) time, we
-// make a cache that lets us map keys to objects with
-// {curveNumber, pointNumber} properties.
-var keyCache = {};
-for (var i = 0; i < x.data.length; i++) {
- var trace = x.data[i];
- if (!trace.key || !trace.set) {
- continue;
- }
- for (var j = 0; j < trace.key.length; j++) {
- var nm = joinSetAndKey(trace.set, trace.key[j]);
- keyCache[nm] = {curveNumber: i, pointNumber: j};
- }
-}
-
-function keysToPoints(set, keys) {
- var curves = {};
- for (var i = 0; i < keys.length; i++) {
- var pt = keyCache[joinSetAndKey(set, keys[i])];
- if (!pt) {
- throw new Error("Unknown key " + keys[i]);
- }
- curves[pt.curveNumber] = curves[pt.curveNumber] || [];
- curves[pt.curveNumber].push(pt.pointNumber);
- }
- return curves;
-}
-*/
diff --git a/docs/articles/interactive_plots_files/plotly-binding-4.7.1/plotly.js b/docs/articles/interactive_plots_files/plotly-binding-4.8.0/plotly.js
similarity index 82%
rename from docs/articles/interactive_plots_files/plotly-binding-4.7.1/plotly.js
rename to docs/articles/interactive_plots_files/plotly-binding-4.8.0/plotly.js
index eaa17a32..1b7f7143 100644
--- a/docs/articles/interactive_plots_files/plotly-binding-4.7.1/plotly.js
+++ b/docs/articles/interactive_plots_files/plotly-binding-4.8.0/plotly.js
@@ -4,13 +4,6 @@ HTMLWidgets.widget({
type: "output",
initialize: function(el, width, height) {
- // when upgrading plotly.js,
- // uncomment this console.log(), then do `load_all(); plot_ly()`
- // open in chrome, right-click on console output: "save-as" -> "schema.json"
- // Schema <- jsonlite::fromJSON("~/Downloads/schema.json")
- // devtools::use_data(Schema, overwrite = T, internal = T)
- // console.log(JSON.stringify(Plotly.PlotSchema.get()));
-
return {};
},
@@ -23,11 +16,38 @@ HTMLWidgets.widget({
},
renderValue: function(el, x, instance) {
+
+ /*
+ / 'inform the world' about highlighting options this is so other
+ / crosstalk libraries have a chance to respond to special settings
+ / such as persistent selection.
+ / AFAIK, leaflet is the only library with such intergration
+ / https://github.com/rstudio/leaflet/pull/346/files#diff-ad0c2d51ce5fdf8c90c7395b102f4265R154
+ */
+ var ctConfig = crosstalk.var('plotlyCrosstalkOpts').set(x.highlight);
if (typeof(window) !== "undefined") {
// make sure plots don't get created outside the network (for on-prem)
window.PLOTLYENV = window.PLOTLYENV || {};
window.PLOTLYENV.BASE_URL = x.base_url;
+
+ // Enable persistent selection when shift key is down
+ // https://stackoverflow.com/questions/1828613/check-if-a-key-is-down
+ var persistOnShift = function(e) {
+ if (!e) window.event;
+ if (e.shiftKey) {
+ x.highlight.persistent = true;
+ x.highlight.persistentShift = true;
+ } else {
+ x.highlight.persistent = false;
+ x.highlight.persistentShift = false;
+ }
+ };
+
+ // Only relevant if we haven't forced persistent mode at command line
+ if (!x.highlight.persistent) {
+ window.onmousemove = persistOnShift;
+ }
}
var graphDiv = document.getElementById(el.id);
@@ -146,10 +166,15 @@ HTMLWidgets.widget({
} else {
+ // new x data could contain a new height/width...
+ // attach to instance so that resize logic knows about the new size
+ instance.width = x.layout.width || instance.width;
+ instance.height = x.layout.height || instance.height;
+
// this is essentially equivalent to Plotly.newPlot(), but avoids creating
// a new webgl context
// https://github.com/plotly/plotly.js/blob/2b24f9def901831e61282076cf3f835598d56f0e/src/plot_api/plot_api.js#L531-L532
-
+
// TODO: restore crosstalk selections?
Plotly.purge(graphDiv);
// TODO: why is this necessary to get crosstalk working?
@@ -174,6 +199,23 @@ HTMLWidgets.widget({
Plotly[msg.method].apply(null, args);
});
}
+
+ // plotly's mapbox API doesn't currently support setting bounding boxes
+ // https://www.mapbox.com/mapbox-gl-js/example/fitbounds/
+ // so we do this manually...
+ // TODO: make sure this triggers on a redraw and relayout as well as on initial draw
+ var mapboxIDs = graphDiv._fullLayout._subplots.mapbox || [];
+ for (var i = 0; i < mapboxIDs.length; i++) {
+ var id = mapboxIDs[i];
+ var mapOpts = x.layout[id] || {};
+ var args = mapOpts._fitBounds || {};
+ if (!args) {
+ continue;
+ }
+ var mapObj = graphDiv._fullLayout[id]._subplot.map;
+ mapObj.fitBounds(args.bounds, args.options);
+ }
+
});
// Attach attributes (e.g., "key", "z") to plotly event data
@@ -264,6 +306,38 @@ HTMLWidgets.widget({
}
+ // send user input event data to dashR
+ // TODO: make this more consistent with Graph() props?
+ var dashRwidgets = window.dashRwidgets || {};
+ var dashRmode = typeof el.setProps === "function" &&
+ typeof dashRwidgets.htmlwidget === "function";
+ if (dashRmode) {
+ graphDiv.on('plotly_relayout', function(d) {
+ el.setProps({"input_plotly_relayout": d});
+ });
+ graphDiv.on('plotly_hover', function(d) {
+ el.setProps({"input_plotly_hover": eventDataWithKey(d)});
+ });
+ graphDiv.on('plotly_click', function(d) {
+ el.setProps({"input_plotly_click": eventDataWithKey(d)});
+ });
+ graphDiv.on('plotly_selected', function(d) {
+ el.setProps({"input_plotly_selected": eventDataWithKey(d)});
+ });
+ graphDiv.on('plotly_unhover', function(eventData) {
+ el.setProps({"input_plotly_hover": null});
+ });
+ graphDiv.on('plotly_doubleclick', function(eventData) {
+ el.setProps({"input_plotly_click": null});
+ });
+ // 'plotly_deselect' is code for doubleclick when in select mode
+ graphDiv.on('plotly_deselect', function(eventData) {
+ el.setProps({"input_plotly_selected": null});
+ el.setProps({"input_plotly_click": null});
+ });
+ }
+
+
// Given an array of {curveNumber: x, pointNumber: y} objects,
// return a hash of {
// set1: {value: [key1, key2, ...], _isSimpleKey: false},
@@ -286,10 +360,15 @@ HTMLWidgets.widget({
_isSimpleKey: trace._isSimpleKey
};
+ // Use pointNumber by default, but aggregated traces should emit pointNumbers
+ var ptNum = points[i].pointNumber;
+ var hasPtNum = typeof ptNum === "number";
+ var ptNum = hasPtNum ? ptNum : points[i].pointNumbers;
+
// selecting a point of a "simple" trace means: select the
// entire key attached to this trace, which is useful for,
// say clicking on a fitted line to select corresponding observations
- var key = trace._isSimpleKey ? trace.key : trace.key[points[i].pointNumber];
+ var key = trace._isSimpleKey ? trace.key : Array.isArray(ptNum) ? ptNum.map(function(idx) { return trace.key[idx]; }) : trace.key[ptNum];
// http://stackoverflow.com/questions/10865025/merge-flatten-an-array-of-arrays-in-javascript
var keyFlat = trace._isNestedKey ? [].concat.apply([], key) : key;
@@ -336,6 +415,17 @@ HTMLWidgets.widget({
var selectionChange = function(e) {
+ // Workaround for 'plotly_selected' now firing previously selected
+ // points (in addition to new ones) when holding shift key. In our case,
+ // we just want the new keys
+ if (x.highlight.on === "plotly_selected" && x.highlight.persistentShift) {
+ // https://stackoverflow.com/questions/1187518/how-to-get-the-difference-between-two-arrays-in-javascript
+ Array.prototype.diff = function(a) {
+ return this.filter(function(i) {return a.indexOf(i) < 0;});
+ };
+ e.value = e.value.diff(e.oldValue);
+ }
+
// array of "event objects" tracking the selection history
// this is used to avoid adding redundant selections
var selectionHistory = crosstalk.var("plotlySelectionHistory").get() || [];
@@ -379,7 +469,7 @@ HTMLWidgets.widget({
selection.on("change", selectionChange);
// Set a crosstalk variable selection value, triggering an update
- graphDiv.on(x.highlight.on, function turnOn(e) {
+ var turnOn = function(e) {
if (e) {
var selectedKeys = pointsToKeys(e.points);
// Keys are group names, values are array of selected keys from group.
@@ -389,7 +479,11 @@ HTMLWidgets.widget({
}
}
}
- });
+ };
+ if (x.highlight.debounce > 0) {
+ turnOn = debounce(turnOn, x.highlight.debounce);
+ }
+ graphDiv.on(x.highlight.on, turnOn);
graphDiv.on(x.highlight.off, function turnOff(e) {
// remove any visual clues
@@ -438,15 +532,7 @@ HTMLWidgets.widget({
}
});
}
-
-
-
-
-
-
-
-
- }
+ } // end of selectionChange
} // end of renderValue
}); // end of widget definition
@@ -558,9 +644,6 @@ TraceManager.prototype.updateSelection = function(group, keys) {
var selectionColour = crosstalk.group(group).var("plotlySelectionColour").get() ||
this.highlight.color[0];
- // selection brush attributes
- var selectAttrs = Object.keys(this.highlight.selected);
-
for (var i = 0; i < this.origData.length; i++) {
// TODO: try using Lib.extendFlat() as done in
// https://github.com/plotly/plotly.js/pull/1136
@@ -577,50 +660,35 @@ TraceManager.prototype.updateSelection = function(group, keys) {
if (!trace._isSimpleKey) {
trace = subsetArrayAttrs(trace, matches);
}
- // Apply selection brush attributes (supplied from R)
- // TODO: it would be neat to have a dropdown to dynamically specify these
- for (var j = 0; j < selectAttrs.length; j++) {
- var attr = selectAttrs[j];
- trace[attr] = this.highlight.selected[attr];
- }
+ // reach into the full trace object so we can properly reflect the
+ // selection attributes in every view
+ var d = this.gd._fullData[i];
+
+ /*
+ / Recursively inherit selection attributes from various sources,
+ / in order of preference:
+ / (1) official plotly.js selected attribute
+ / (2) highlight(selected = attrs_selected(...))
+ */
+ // TODO: it would be neat to have a dropdown to dynamically specify these!
+ $.extend(true, trace, this.highlight.selected);
// if it is defined, override color with the "dynamic brush color""
- // TODO: DRY this up
- var d = this.gd._fullData[i];
if (d.marker) {
trace.marker = trace.marker || {};
trace.marker.color = selectionColour || trace.marker.color || d.marker.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.marker || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.marker[attrs[j]] = selected[attrs[j]];
- }
}
-
if (d.line) {
trace.line = trace.line || {};
trace.line.color = selectionColour || trace.line.color || d.line.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.line || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.line[attrs[j]] = selected[attrs[j]];
- }
}
-
if (d.textfont) {
trace.textfont = trace.textfont || {};
trace.textfont.color = selectionColour || trace.textfont.color || d.textfont.color;
-
- // adopt any user-defined styling for the selection
- var selected = this.highlight.selected.textfont || {};
- var attrs = Object.keys(selected);
- for (var j = 0; j < attrs.length; j++) {
- trace.textfont[attrs[j]] = selected[attrs[j]];
- }
+ }
+ if (d.fillcolor) {
+ // TODO: should selectionColour inherit alpha from the existing fillcolor?
+ trace.fillcolor = selectionColour || trace.fillcolor || d.fillcolor;
}
// attach a sensible name/legendgroup
trace.name = trace.name || keys.join("
");
@@ -719,6 +787,8 @@ TraceManager.prototype.updateSelection = function(group, keys) {
if (tracesToDim.length > 0) {
Plotly.restyle(this.gd, {"opacity": opacities}, tracesToDim);
+ // turn off the selected/unselected API
+ Plotly.restyle(this.gd, {"selectedpoints": null});
}
}
@@ -821,3 +891,25 @@ function removeBrush(el) {
outlines[i].remove();
}
}
+
+
+// https://davidwalsh.name/javascript-debounce-function
+
+// Returns a function, that, as long as it continues to be invoked, will not
+// be triggered. The function will be called after it stops being called for
+// N milliseconds. If `immediate` is passed, trigger the function on the
+// leading edge, instead of the trailing.
+function debounce(func, wait, immediate) {
+ var timeout;
+ return function() {
+ var context = this, args = arguments;
+ var later = function() {
+ timeout = null;
+ if (!immediate) func.apply(context, args);
+ };
+ var callNow = immediate && !timeout;
+ clearTimeout(timeout);
+ timeout = setTimeout(later, wait);
+ if (callNow) func.apply(context, args);
+ };
+};
diff --git a/docs/articles/interactive_plots_files/plotlyjs-1.26.1/plotly-htmlwidgets.css b/docs/articles/interactive_plots_files/plotly-htmlwidgets-css-1.39.2/plotly-htmlwidgets.css
similarity index 100%
rename from docs/articles/interactive_plots_files/plotlyjs-1.26.1/plotly-htmlwidgets.css
rename to docs/articles/interactive_plots_files/plotly-htmlwidgets-css-1.39.2/plotly-htmlwidgets.css
diff --git a/docs/articles/interactive_plots_files/plotly-main-1.39.2/plotly-latest.min.js b/docs/articles/interactive_plots_files/plotly-main-1.39.2/plotly-latest.min.js
new file mode 100644
index 00000000..56bc1f24
--- /dev/null
+++ b/docs/articles/interactive_plots_files/plotly-main-1.39.2/plotly-latest.min.js
@@ -0,0 +1,7 @@
+/**
+* plotly.js v1.39.2
+* Copyright 2012-2018, Plotly, Inc.
+* All rights reserved.
+* Licensed under the MIT license
+*/
+!function(t){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{("undefined"!=typeof window?window:"undefined"!=typeof global?global:"undefined"!=typeof self?self:this).Plotly=t()}}(function(){return function(){return function t(e,r,n){function i(o,s){if(!r[o]){if(!e[o]){var l="function"==typeof require&&require;if(!s&&l)return l(o,!0);if(a)return a(o,!0);var c=new Error("Cannot find module '"+o+"'");throw c.code="MODULE_NOT_FOUND",c}var u=r[o]={exports:{}};e[o][0].call(u.exports,function(t){var r=e[o][1][t];return i(r||t)},u,u.exports,t,e,r,n)}return r[o].exports}for(var a="function"==typeof require&&require,o=0;o
Math.abs(e))c.rotate(o,0,0,-t*i*Math.PI*d.rotateSpeed/window.innerWidth);else{var s=d.zoomSpeed*a*e/window.innerHeight*(o-c.lastT())/100;c.pan(o,0,0,h*(Math.exp(s)-1))}},!0),d};var n=t("right-now"),i=t("3d-view"),a=t("mouse-change"),o=t("mouse-wheel"),s=t("mouse-event-offset"),l=t("has-passive-events")},{"3d-view":43,"has-passive-events":379,"mouse-change":402,"mouse-event-offset":403,"mouse-wheel":405,"right-now":465}],43:[function(t,e,r){"use strict";e.exports=function(t){var e=(t=t||{}).eye||[0,0,1],r=t.center||[0,0,0],s=t.up||[0,1,0],l=t.distanceLimits||[0,1/0],c=t.mode||"turntable",u=n(),h=i(),f=a();return u.setDistanceLimits(l[0],l[1]),u.lookAt(0,e,r,s),h.setDistanceLimits(l[0],l[1]),h.lookAt(0,e,r,s),f.setDistanceLimits(l[0],l[1]),f.lookAt(0,e,r,s),new o({turntable:u,orbit:h,matrix:f},c)};var n=t("turntable-camera-controller"),i=t("orbit-camera-controller"),a=t("matrix-camera-controller");function o(t,e){this._controllerNames=Object.keys(t),this._controllerList=this._controllerNames.map(function(e){return t[e]}),this._mode=e,this._active=t[e],this._active||(this._mode="turntable",this._active=t.turntable),this.modes=this._controllerNames,this.computedMatrix=this._active.computedMatrix,this.computedEye=this._active.computedEye,this.computedUp=this._active.computedUp,this.computedCenter=this._active.computedCenter,this.computedRadius=this._active.computedRadius}var s=o.prototype;[["flush",1],["idle",1],["lookAt",4],["rotate",4],["pan",4],["translate",4],["setMatrix",2],["setDistanceLimits",2],["setDistance",2]].forEach(function(t){for(var e=t[0],r=[],n=0;n halfCharStep + halfCharWidth ||\n\t\t\t\t\tfloor(uv.x) < halfCharStep - halfCharWidth) return;\n\n\t\t\t\tuv += charId * charStep;\n\t\t\t\tuv = uv / atlasSize;\n\n\t\t\t\tvec4 color = fontColor;\n\t\t\t\tvec4 mask = texture2D(atlas, uv);\n\n\t\t\t\tfloat maskY = lightness(mask);\n\t\t\t\t// float colorY = lightness(color);\n\t\t\t\tcolor.a *= maskY;\n\t\t\t\tcolor.a *= opacity;\n\n\t\t\t\t// color.a += .1;\n\n\t\t\t\t// antialiasing, see yiq color space y-channel formula\n\t\t\t\t// color.rgb += (1. - color.rgb) * (1. - mask.rgb);\n\n\t\t\t\tgl_FragColor = color;\n\t\t\t}"});return{regl:t,draw:e,atlas:{}}},w.prototype.update=function(t){var e=this;if("string"==typeof t)t={text:t};else if(!t)return;null!=(t=i(t,{position:"position positions coord coords coordinates",font:"font fontFace fontface typeface cssFont css-font family fontFamily",fontSize:"fontSize fontsize size font-size",text:"text texts chars characters value values symbols",align:"align alignment textAlign textbaseline",baseline:"baseline textBaseline textbaseline",direction:"dir direction textDirection",color:"color colour fill fill-color fillColor textColor textcolor",kerning:"kerning kern",range:"range dataBox",viewport:"vp viewport viewBox viewbox viewPort",opacity:"opacity alpha transparency visible visibility opaque",offset:"offset positionOffset padding shift indent indentation"},!0)).opacity&&(Array.isArray(t.opacity)?this.opacity=t.opacity.map(function(t){return parseFloat(t)}):this.opacity=parseFloat(t.opacity)),null!=t.viewport&&(this.viewport=h(t.viewport),w.normalViewport&&(this.viewport.y=this.canvas.height-this.viewport.y-this.viewport.height),this.viewportArray=[this.viewport.x,this.viewport.y,this.viewport.width,this.viewport.height]),null==this.viewport&&(this.viewport={x:0,y:0,width:this.gl.drawingBufferWidth,height:this.gl.drawingBufferHeight},this.viewportArray=[this.viewport.x,this.viewport.y,this.viewport.width,this.viewport.height]),null!=t.kerning&&(this.kerning=t.kerning),null!=t.offset&&("number"==typeof 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vt=(c+(n=n+Math.imul(h,H)|0)|0)+((8191&(i=(i=i+Math.imul(h,G)|0)+Math.imul(f,H)|0))<<13)|0;c=((a=a+Math.imul(f,G)|0)+(i>>>13)|0)+(vt>>>26)|0,vt&=67108863,n=Math.imul(v,V),i=(i=Math.imul(v,U))+Math.imul(y,V)|0,a=Math.imul(y,U),n=n+Math.imul(d,H)|0,i=(i=i+Math.imul(d,G)|0)+Math.imul(g,H)|0,a=a+Math.imul(g,G)|0;var yt=(c+(n=n+Math.imul(h,Y)|0)|0)+((8191&(i=(i=i+Math.imul(h,X)|0)+Math.imul(f,Y)|0))<<13)|0;c=((a=a+Math.imul(f,X)|0)+(i>>>13)|0)+(yt>>>26)|0,yt&=67108863,n=Math.imul(b,V),i=(i=Math.imul(b,U))+Math.imul(_,V)|0,a=Math.imul(_,U),n=n+Math.imul(v,H)|0,i=(i=i+Math.imul(v,G)|0)+Math.imul(y,H)|0,a=a+Math.imul(y,G)|0,n=n+Math.imul(d,Y)|0,i=(i=i+Math.imul(d,X)|0)+Math.imul(g,Y)|0,a=a+Math.imul(g,X)|0;var xt=(c+(n=n+Math.imul(h,$)|0)|0)+((8191&(i=(i=i+Math.imul(h,J)|0)+Math.imul(f,$)|0))<<13)|0;c=((a=a+Math.imul(f,J)|0)+(i>>>13)|0)+(xt>>>26)|0,xt&=67108863,n=Math.imul(k,V),i=(i=Math.imul(k,U))+Math.imul(M,V)|0,a=Math.imul(M,U),n=n+Math.imul(b,H)|0,i=(i=i+Math.imul(b,G)|0)+Math.imul(_,H)|0,a=a+Math.imul(_,G)|0,n=n+Math.imul(v,Y)|0,i=(i=i+Math.imul(v,X)|0)+Math.imul(y,Y)|0,a=a+Math.imul(y,X)|0,n=n+Math.imul(d,$)|0,i=(i=i+Math.imul(d,J)|0)+Math.imul(g,$)|0,a=a+Math.imul(g,J)|0;var bt=(c+(n=n+Math.imul(h,Q)|0)|0)+((8191&(i=(i=i+Math.imul(h,tt)|0)+Math.imul(f,Q)|0))<<13)|0;c=((a=a+Math.imul(f,tt)|0)+(i>>>13)|0)+(bt>>>26)|0,bt&=67108863,n=Math.imul(T,V),i=(i=Math.imul(T,U))+Math.imul(S,V)|0,a=Math.imul(S,U),n=n+Math.imul(k,H)|0,i=(i=i+Math.imul(k,G)|0)+Math.imul(M,H)|0,a=a+Math.imul(M,G)|0,n=n+Math.imul(b,Y)|0,i=(i=i+Math.imul(b,X)|0)+Math.imul(_,Y)|0,a=a+Math.imul(_,X)|0,n=n+Math.imul(v,$)|0,i=(i=i+Math.imul(v,J)|0)+Math.imul(y,$)|0,a=a+Math.imul(y,J)|0,n=n+Math.imul(d,Q)|0,i=(i=i+Math.imul(d,tt)|0)+Math.imul(g,Q)|0,a=a+Math.imul(g,tt)|0;var _t=(c+(n=n+Math.imul(h,rt)|0)|0)+((8191&(i=(i=i+Math.imul(h,nt)|0)+Math.imul(f,rt)|0))<<13)|0;c=((a=a+Math.imul(f,nt)|0)+(i>>>13)|0)+(_t>>>26)|0,_t&=67108863,n=Math.imul(C,V),i=(i=Math.imul(C,U))+Math.imul(L,V)|0,a=Math.imul(L,U),n=n+Math.imul(T,H)|0,i=(i=i+Math.imul(T,G)|0)+Math.imul(S,H)|0,a=a+Math.imul(S,G)|0,n=n+Math.imul(k,Y)|0,i=(i=i+Math.imul(k,X)|0)+Math.imul(M,Y)|0,a=a+Math.imul(M,X)|0,n=n+Math.imul(b,$)|0,i=(i=i+Math.imul(b,J)|0)+Math.imul(_,$)|0,a=a+Math.imul(_,J)|0,n=n+Math.imul(v,Q)|0,i=(i=i+Math.imul(v,tt)|0)+Math.imul(y,Q)|0,a=a+Math.imul(y,tt)|0,n=n+Math.imul(d,rt)|0,i=(i=i+Math.imul(d,nt)|0)+Math.imul(g,rt)|0,a=a+Math.imul(g,nt)|0;var wt=(c+(n=n+Math.imul(h,at)|0)|0)+((8191&(i=(i=i+Math.imul(h,ot)|0)+Math.imul(f,at)|0))<<13)|0;c=((a=a+Math.imul(f,ot)|0)+(i>>>13)|0)+(wt>>>26)|0,wt&=67108863,n=Math.imul(P,V),i=(i=Math.imul(P,U))+Math.imul(I,V)|0,a=Math.imul(I,U),n=n+Math.imul(C,H)|0,i=(i=i+Math.imul(C,G)|0)+Math.imul(L,H)|0,a=a+Math.imul(L,G)|0,n=n+Math.imul(T,Y)|0,i=(i=i+Math.imul(T,X)|0)+Math.imul(S,Y)|0,a=a+Math.imul(S,X)|0,n=n+Math.imul(k,$)|0,i=(i=i+Math.imul(k,J)|0)+Math.imul(M,$)|0,a=a+Math.imul(M,J)|0,n=n+Math.imul(b,Q)|0,i=(i=i+Math.imul(b,tt)|0)+Math.imul(_,Q)|0,a=a+Math.imul(_,tt)|0,n=n+Math.imul(v,rt)|0,i=(i=i+Math.imul(v,nt)|0)+Math.imul(y,rt)|0,a=a+Math.imul(y,nt)|0,n=n+Math.imul(d,at)|0,i=(i=i+Math.imul(d,ot)|0)+Math.imul(g,at)|0,a=a+Math.imul(g,ot)|0;var kt=(c+(n=n+Math.imul(h,lt)|0)|0)+((8191&(i=(i=i+Math.imul(h,ct)|0)+Math.imul(f,lt)|0))<<13)|0;c=((a=a+Math.imul(f,ct)|0)+(i>>>13)|0)+(kt>>>26)|0,kt&=67108863,n=Math.imul(D,V),i=(i=Math.imul(D,U))+Math.imul(R,V)|0,a=Math.imul(R,U),n=n+Math.imul(P,H)|0,i=(i=i+Math.imul(P,G)|0)+Math.imul(I,H)|0,a=a+Math.imul(I,G)|0,n=n+Math.imul(C,Y)|0,i=(i=i+Math.imul(C,X)|0)+Math.imul(L,Y)|0,a=a+Math.imul(L,X)|0,n=n+Math.imul(T,$)|0,i=(i=i+Math.imul(T,J)|0)+Math.imul(S,$)|0,a=a+Math.imul(S,J)|0,n=n+Math.imul(k,Q)|0,i=(i=i+Math.imul(k,tt)|0)+Math.imul(M,Q)|0,a=a+Math.imul(M,tt)|0,n=n+Math.imul(b,rt)|0,i=(i=i+Math.imul(b,nt)|0)+Math.imul(_,rt)|0,a=a+Math.imul(_,nt)|0,n=n+Math.imul(v,at)|0,i=(i=i+Math.imul(v,ot)|0)+Math.imul(y,at)|0,a=a+Math.imul(y,ot)|0,n=n+Math.imul(d,lt)|0,i=(i=i+Math.imul(d,ct)|0)+Math.imul(g,lt)|0,a=a+Math.imul(g,ct)|0;var Mt=(c+(n=n+Math.imul(h,ht)|0)|0)+((8191&(i=(i=i+Math.imul(h,ft)|0)+Math.imul(f,ht)|0))<<13)|0;c=((a=a+Math.imul(f,ft)|0)+(i>>>13)|0)+(Mt>>>26)|0,Mt&=67108863,n=Math.imul(F,V),i=(i=Math.imul(F,U))+Math.imul(N,V)|0,a=Math.imul(N,U),n=n+Math.imul(D,H)|0,i=(i=i+Math.imul(D,G)|0)+Math.imul(R,H)|0,a=a+Math.imul(R,G)|0,n=n+Math.imul(P,Y)|0,i=(i=i+Math.imul(P,X)|0)+Math.imul(I,Y)|0,a=a+Math.imul(I,X)|0,n=n+Math.imul(C,$)|0,i=(i=i+Math.imul(C,J)|0)+Math.imul(L,$)|0,a=a+Math.imul(L,J)|0,n=n+Math.imul(T,Q)|0,i=(i=i+Math.imul(T,tt)|0)+Math.imul(S,Q)|0,a=a+Math.imul(S,tt)|0,n=n+Math.imul(k,rt)|0,i=(i=i+Math.imul(k,nt)|0)+Math.imul(M,rt)|0,a=a+Math.imul(M,nt)|0,n=n+Math.imul(b,at)|0,i=(i=i+Math.imul(b,ot)|0)+Math.imul(_,at)|0,a=a+Math.imul(_,ot)|0,n=n+Math.imul(v,lt)|0,i=(i=i+Math.imul(v,ct)|0)+Math.imul(y,lt)|0,a=a+Math.imul(y,ct)|0,n=n+Math.imul(d,ht)|0,i=(i=i+Math.imul(d,ft)|0)+Math.imul(g,ht)|0,a=a+Math.imul(g,ft)|0;var At=(c+(n=n+Math.imul(h,dt)|0)|0)+((8191&(i=(i=i+Math.imul(h,gt)|0)+Math.imul(f,dt)|0))<<13)|0;c=((a=a+Math.imul(f,gt)|0)+(i>>>13)|0)+(At>>>26)|0,At&=67108863,n=Math.imul(F,H),i=(i=Math.imul(F,G))+Math.imul(N,H)|0,a=Math.imul(N,G),n=n+Math.imul(D,Y)|0,i=(i=i+Math.imul(D,X)|0)+Math.imul(R,Y)|0,a=a+Math.imul(R,X)|0,n=n+Math.imul(P,$)|0,i=(i=i+Math.imul(P,J)|0)+Math.imul(I,$)|0,a=a+Math.imul(I,J)|0,n=n+Math.imul(C,Q)|0,i=(i=i+Math.imul(C,tt)|0)+Math.imul(L,Q)|0,a=a+Math.imul(L,tt)|0,n=n+Math.imul(T,rt)|0,i=(i=i+Math.imul(T,nt)|0)+Math.imul(S,rt)|0,a=a+Math.imul(S,nt)|0,n=n+Math.imul(k,at)|0,i=(i=i+Math.imul(k,ot)|0)+Math.imul(M,at)|0,a=a+Math.imul(M,ot)|0,n=n+Math.imul(b,lt)|0,i=(i=i+Math.imul(b,ct)|0)+Math.imul(_,lt)|0,a=a+Math.imul(_,ct)|0,n=n+Math.imul(v,ht)|0,i=(i=i+Math.imul(v,ft)|0)+Math.imul(y,ht)|0,a=a+Math.imul(y,ft)|0;var Tt=(c+(n=n+Math.imul(d,dt)|0)|0)+((8191&(i=(i=i+Math.imul(d,gt)|0)+Math.imul(g,dt)|0))<<13)|0;c=((a=a+Math.imul(g,gt)|0)+(i>>>13)|0)+(Tt>>>26)|0,Tt&=67108863,n=Math.imul(F,Y),i=(i=Math.imul(F,X))+Math.imul(N,Y)|0,a=Math.imul(N,X),n=n+Math.imul(D,$)|0,i=(i=i+Math.imul(D,J)|0)+Math.imul(R,$)|0,a=a+Math.imul(R,J)|0,n=n+Math.imul(P,Q)|0,i=(i=i+Math.imul(P,tt)|0)+Math.imul(I,Q)|0,a=a+Math.imul(I,tt)|0,n=n+Math.imul(C,rt)|0,i=(i=i+Math.imul(C,nt)|0)+Math.imul(L,rt)|0,a=a+Math.imul(L,nt)|0,n=n+Math.imul(T,at)|0,i=(i=i+Math.imul(T,ot)|0)+Math.imul(S,at)|0,a=a+Math.imul(S,ot)|0,n=n+Math.imul(k,lt)|0,i=(i=i+Math.imul(k,ct)|0)+Math.imul(M,lt)|0,a=a+Math.imul(M,ct)|0,n=n+Math.imul(b,ht)|0,i=(i=i+Math.imul(b,ft)|0)+Math.imul(_,ht)|0,a=a+Math.imul(_,ft)|0;var St=(c+(n=n+Math.imul(v,dt)|0)|0)+((8191&(i=(i=i+Math.imul(v,gt)|0)+Math.imul(y,dt)|0))<<13)|0;c=((a=a+Math.imul(y,gt)|0)+(i>>>13)|0)+(St>>>26)|0,St&=67108863,n=Math.imul(F,$),i=(i=Math.imul(F,J))+Math.imul(N,$)|0,a=Math.imul(N,J),n=n+Math.imul(D,Q)|0,i=(i=i+Math.imul(D,tt)|0)+Math.imul(R,Q)|0,a=a+Math.imul(R,tt)|0,n=n+Math.imul(P,rt)|0,i=(i=i+Math.imul(P,nt)|0)+Math.imul(I,rt)|0,a=a+Math.imul(I,nt)|0,n=n+Math.imul(C,at)|0,i=(i=i+Math.imul(C,ot)|0)+Math.imul(L,at)|0,a=a+Math.imul(L,ot)|0,n=n+Math.imul(T,lt)|0,i=(i=i+Math.imul(T,ct)|0)+Math.imul(S,lt)|0,a=a+Math.imul(S,ct)|0,n=n+Math.imul(k,ht)|0,i=(i=i+Math.imul(k,ft)|0)+Math.imul(M,ht)|0,a=a+Math.imul(M,ft)|0;var Et=(c+(n=n+Math.imul(b,dt)|0)|0)+((8191&(i=(i=i+Math.imul(b,gt)|0)+Math.imul(_,dt)|0))<<13)|0;c=((a=a+Math.imul(_,gt)|0)+(i>>>13)|0)+(Et>>>26)|0,Et&=67108863,n=Math.imul(F,Q),i=(i=Math.imul(F,tt))+Math.imul(N,Q)|0,a=Math.imul(N,tt),n=n+Math.imul(D,rt)|0,i=(i=i+Math.imul(D,nt)|0)+Math.imul(R,rt)|0,a=a+Math.imul(R,nt)|0,n=n+Math.imul(P,at)|0,i=(i=i+Math.imul(P,ot)|0)+Math.imul(I,at)|0,a=a+Math.imul(I,ot)|0,n=n+Math.imul(C,lt)|0,i=(i=i+Math.imul(C,ct)|0)+Math.imul(L,lt)|0,a=a+Math.imul(L,ct)|0,n=n+Math.imul(T,ht)|0,i=(i=i+Math.imul(T,ft)|0)+Math.imul(S,ht)|0,a=a+Math.imul(S,ft)|0;var Ct=(c+(n=n+Math.imul(k,dt)|0)|0)+((8191&(i=(i=i+Math.imul(k,gt)|0)+Math.imul(M,dt)|0))<<13)|0;c=((a=a+Math.imul(M,gt)|0)+(i>>>13)|0)+(Ct>>>26)|0,Ct&=67108863,n=Math.imul(F,rt),i=(i=Math.imul(F,nt))+Math.imul(N,rt)|0,a=Math.imul(N,nt),n=n+Math.imul(D,at)|0,i=(i=i+Math.imul(D,ot)|0)+Math.imul(R,at)|0,a=a+Math.imul(R,ot)|0,n=n+Math.imul(P,lt)|0,i=(i=i+Math.imul(P,ct)|0)+Math.imul(I,lt)|0,a=a+Math.imul(I,ct)|0,n=n+Math.imul(C,ht)|0,i=(i=i+Math.imul(C,ft)|0)+Math.imul(L,ht)|0,a=a+Math.imul(L,ft)|0;var Lt=(c+(n=n+Math.imul(T,dt)|0)|0)+((8191&(i=(i=i+Math.imul(T,gt)|0)+Math.imul(S,dt)|0))<<13)|0;c=((a=a+Math.imul(S,gt)|0)+(i>>>13)|0)+(Lt>>>26)|0,Lt&=67108863,n=Math.imul(F,at),i=(i=Math.imul(F,ot))+Math.imul(N,at)|0,a=Math.imul(N,ot),n=n+Math.imul(D,lt)|0,i=(i=i+Math.imul(D,ct)|0)+Math.imul(R,lt)|0,a=a+Math.imul(R,ct)|0,n=n+Math.imul(P,ht)|0,i=(i=i+Math.imul(P,ft)|0)+Math.imul(I,ht)|0,a=a+Math.imul(I,ft)|0;var zt=(c+(n=n+Math.imul(C,dt)|0)|0)+((8191&(i=(i=i+Math.imul(C,gt)|0)+Math.imul(L,dt)|0))<<13)|0;c=((a=a+Math.imul(L,gt)|0)+(i>>>13)|0)+(zt>>>26)|0,zt&=67108863,n=Math.imul(F,lt),i=(i=Math.imul(F,ct))+Math.imul(N,lt)|0,a=Math.imul(N,ct),n=n+Math.imul(D,ht)|0,i=(i=i+Math.imul(D,ft)|0)+Math.imul(R,ht)|0,a=a+Math.imul(R,ft)|0;var Pt=(c+(n=n+Math.imul(P,dt)|0)|0)+((8191&(i=(i=i+Math.imul(P,gt)|0)+Math.imul(I,dt)|0))<<13)|0;c=((a=a+Math.imul(I,gt)|0)+(i>>>13)|0)+(Pt>>>26)|0,Pt&=67108863,n=Math.imul(F,ht),i=(i=Math.imul(F,ft))+Math.imul(N,ht)|0,a=Math.imul(N,ft);var It=(c+(n=n+Math.imul(D,dt)|0)|0)+((8191&(i=(i=i+Math.imul(D,gt)|0)+Math.imul(R,dt)|0))<<13)|0;c=((a=a+Math.imul(R,gt)|0)+(i>>>13)|0)+(It>>>26)|0,It&=67108863;var Ot=(c+(n=Math.imul(F,dt))|0)+((8191&(i=(i=Math.imul(F,gt))+Math.imul(N,dt)|0))<<13)|0;return c=((a=Math.imul(N,gt))+(i>>>13)|0)+(Ot>>>26)|0,Ot&=67108863,l[0]=mt,l[1]=vt,l[2]=yt,l[3]=xt,l[4]=bt,l[5]=_t,l[6]=wt,l[7]=kt,l[8]=Mt,l[9]=At,l[10]=Tt,l[11]=St,l[12]=Et,l[13]=Ct,l[14]=Lt,l[15]=zt,l[16]=Pt,l[17]=It,l[18]=Ot,0!==c&&(l[19]=c,r.length++),r};function d(t,e,r){return(new g).mulp(t,e,r)}function g(t,e){this.x=t,this.y=e}Math.imul||(p=f),a.prototype.mulTo=function(t,e){var r=this.length+t.length;return 10===this.length&&10===t.length?p(this,t,e):r<63?f(this,t,e):r<1024?function(t,e,r){r.negative=e.negative^t.negative,r.length=t.length+e.length;for(var n=0,i=0,a=0;a>>26)|0)>>>26,o&=67108863}r.words[a]=s,n=o,o=i}return 0!==n?r.words[a]=n:r.length--,r.strip()}(this,t,e):d(this,t,e)},g.prototype.makeRBT=function(t){for(var e=new Array(t),r=a.prototype._countBits(t)-1,n=0;n>=1;return n},g.prototype.permute=function(t,e,r,n,i,a){for(var o=0;o>>=1)i++;return 1<>>=13,r[2*o+1]=8191&a,a>>>=13;for(o=2*e;o>=26,e+=i/67108864|0,e+=a>>>26,this.words[r]=67108863&a}return 0!==e&&(this.words[r]=e,this.length++),this},a.prototype.muln=function(t){return this.clone().imuln(t)},a.prototype.sqr=function(){return this.mul(this)},a.prototype.isqr=function(){return this.imul(this.clone())},a.prototype.pow=function(t){var e=function(t){for(var e=new Array(t.bitLength()),r=0;r>>i}return e}(t);if(0===e.length)return new a(1);for(var r=this,n=0;n=0);var e,r=t%26,i=(t-r)/26,a=67108863>>>26-r<<26-r;if(0!==r){var o=0;for(e=0;e>>26-r}o&&(this.words[e]=o,this.length++)}if(0!==i){for(e=this.length-1;e>=0;e--)this.words[e+i]=this.words[e];for(e=0;e=0),i=e?(e-e%26)/26:0;var a=t%26,o=Math.min((t-a)/26,this.length),s=67108863^67108863>>>a<o)for(this.length-=o,c=0;c=0&&(0!==u||c>=i);c--){var h=0|this.words[c];this.words[c]=u<<26-a|h>>>a,u=h&s}return l&&0!==u&&(l.words[l.length++]=u),0===this.length&&(this.words[0]=0,this.length=1),this.strip()},a.prototype.ishrn=function(t,e,r){return n(0===this.negative),this.iushrn(t,e,r)},a.prototype.shln=function(t){return this.clone().ishln(t)},a.prototype.ushln=function(t){return this.clone().iushln(t)},a.prototype.shrn=function(t){return this.clone().ishrn(t)},a.prototype.ushrn=function(t){return this.clone().iushrn(t)},a.prototype.testn=function(t){n("number"==typeof t&&t>=0);var e=t%26,r=(t-e)/26,i=1<=0);var e=t%26,r=(t-e)/26;if(n(0===this.negative,"imaskn works only with positive numbers"),this.length<=r)return this;if(0!==e&&r++,this.length=Math.min(r,this.length),0!==e){var i=67108863^67108863>>>e<=67108864;e++)this.words[e]-=67108864,e===this.length-1?this.words[e+1]=1:this.words[e+1]++;return this.length=Math.max(this.length,e+1),this},a.prototype.isubn=function(t){if(n("number"==typeof t),n(t<67108864),t<0)return this.iaddn(-t);if(0!==this.negative)return this.negative=0,this.iaddn(t),this.negative=1,this;if(this.words[0]-=t,1===this.length&&this.words[0]<0)this.words[0]=-this.words[0],this.negative=1;else for(var e=0;e>26)-(l/67108864|0),this.words[i+r]=67108863&a}for(;i>26,this.words[i+r]=67108863&a;if(0===s)return this.strip();for(n(-1===s),s=0,i=0;i>26,this.words[i]=67108863&a;return this.negative=1,this.strip()},a.prototype._wordDiv=function(t,e){var r=(this.length,t.length),n=this.clone(),i=t,o=0|i.words[i.length-1];0!==(r=26-this._countBits(o))&&(i=i.ushln(r),n.iushln(r),o=0|i.words[i.length-1]);var s,l=n.length-i.length;if("mod"!==e){(s=new a(null)).length=l+1,s.words=new Array(s.length);for(var c=0;c=0;h--){var f=67108864*(0|n.words[i.length+h])+(0|n.words[i.length+h-1]);for(f=Math.min(f/o|0,67108863),n._ishlnsubmul(i,f,h);0!==n.negative;)f--,n.negative=0,n._ishlnsubmul(i,1,h),n.isZero()||(n.negative^=1);s&&(s.words[h]=f)}return s&&s.strip(),n.strip(),"div"!==e&&0!==r&&n.iushrn(r),{div:s||null,mod:n}},a.prototype.divmod=function(t,e,r){return n(!t.isZero()),this.isZero()?{div:new a(0),mod:new a(0)}:0!==this.negative&&0===t.negative?(s=this.neg().divmod(t,e),"mod"!==e&&(i=s.div.neg()),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.iadd(t)),{div:i,mod:o}):0===this.negative&&0!==t.negative?(s=this.divmod(t.neg(),e),"mod"!==e&&(i=s.div.neg()),{div:i,mod:s.mod}):0!=(this.negative&t.negative)?(s=this.neg().divmod(t.neg(),e),"div"!==e&&(o=s.mod.neg(),r&&0!==o.negative&&o.isub(t)),{div:s.div,mod:o}):t.length>this.length||this.cmp(t)<0?{div:new a(0),mod:this}:1===t.length?"div"===e?{div:this.divn(t.words[0]),mod:null}:"mod"===e?{div:null,mod:new a(this.modn(t.words[0]))}:{div:this.divn(t.words[0]),mod:new a(this.modn(t.words[0]))}:this._wordDiv(t,e);var i,o,s},a.prototype.div=function(t){return this.divmod(t,"div",!1).div},a.prototype.mod=function(t){return this.divmod(t,"mod",!1).mod},a.prototype.umod=function(t){return this.divmod(t,"mod",!0).mod},a.prototype.divRound=function(t){var e=this.divmod(t);if(e.mod.isZero())return e.div;var r=0!==e.div.negative?e.mod.isub(t):e.mod,n=t.ushrn(1),i=t.andln(1),a=r.cmp(n);return a<0||1===i&&0===a?e.div:0!==e.div.negative?e.div.isubn(1):e.div.iaddn(1)},a.prototype.modn=function(t){n(t<=67108863);for(var e=(1<<26)%t,r=0,i=this.length-1;i>=0;i--)r=(e*r+(0|this.words[i]))%t;return r},a.prototype.idivn=function(t){n(t<=67108863);for(var e=0,r=this.length-1;r>=0;r--){var i=(0|this.words[r])+67108864*e;this.words[r]=i/t|0,e=i%t}return this.strip()},a.prototype.divn=function(t){return this.clone().idivn(t)},a.prototype.egcd=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i=new a(1),o=new a(0),s=new a(0),l=new a(1),c=0;e.isEven()&&r.isEven();)e.iushrn(1),r.iushrn(1),++c;for(var u=r.clone(),h=e.clone();!e.isZero();){for(var f=0,p=1;0==(e.words[0]&p)&&f<26;++f,p<<=1);if(f>0)for(e.iushrn(f);f-- >0;)(i.isOdd()||o.isOdd())&&(i.iadd(u),o.isub(h)),i.iushrn(1),o.iushrn(1);for(var d=0,g=1;0==(r.words[0]&g)&&d<26;++d,g<<=1);if(d>0)for(r.iushrn(d);d-- >0;)(s.isOdd()||l.isOdd())&&(s.iadd(u),l.isub(h)),s.iushrn(1),l.iushrn(1);e.cmp(r)>=0?(e.isub(r),i.isub(s),o.isub(l)):(r.isub(e),s.isub(i),l.isub(o))}return{a:s,b:l,gcd:r.iushln(c)}},a.prototype._invmp=function(t){n(0===t.negative),n(!t.isZero());var e=this,r=t.clone();e=0!==e.negative?e.umod(t):e.clone();for(var i,o=new a(1),s=new a(0),l=r.clone();e.cmpn(1)>0&&r.cmpn(1)>0;){for(var c=0,u=1;0==(e.words[0]&u)&&c<26;++c,u<<=1);if(c>0)for(e.iushrn(c);c-- >0;)o.isOdd()&&o.iadd(l),o.iushrn(1);for(var h=0,f=1;0==(r.words[0]&f)&&h<26;++h,f<<=1);if(h>0)for(r.iushrn(h);h-- >0;)s.isOdd()&&s.iadd(l),s.iushrn(1);e.cmp(r)>=0?(e.isub(r),o.isub(s)):(r.isub(e),s.isub(o))}return(i=0===e.cmpn(1)?o:s).cmpn(0)<0&&i.iadd(t),i},a.prototype.gcd=function(t){if(this.isZero())return t.abs();if(t.isZero())return this.abs();var e=this.clone(),r=t.clone();e.negative=0,r.negative=0;for(var n=0;e.isEven()&&r.isEven();n++)e.iushrn(1),r.iushrn(1);for(;;){for(;e.isEven();)e.iushrn(1);for(;r.isEven();)r.iushrn(1);var i=e.cmp(r);if(i<0){var a=e;e=r,r=a}else if(0===i||0===r.cmpn(1))break;e.isub(r)}return r.iushln(n)},a.prototype.invm=function(t){return this.egcd(t).a.umod(t)},a.prototype.isEven=function(){return 0==(1&this.words[0])},a.prototype.isOdd=function(){return 1==(1&this.words[0])},a.prototype.andln=function(t){return this.words[0]&t},a.prototype.bincn=function(t){n("number"==typeof t);var e=t%26,r=(t-e)/26,i=1<>>26,s&=67108863,this.words[o]=s}return 0!==a&&(this.words[o]=a,this.length++),this},a.prototype.isZero=function(){return 1===this.length&&0===this.words[0]},a.prototype.cmpn=function(t){var e,r=t<0;if(0!==this.negative&&!r)return-1;if(0===this.negative&&r)return 1;if(this.strip(),this.length>1)e=1;else{r&&(t=-t),n(t<=67108863,"Number is too big");var i=0|this.words[0];e=i===t?0:it.length)return 1;if(this.length=0;r--){var n=0|this.words[r],i=0|t.words[r];if(n!==i){ni&&(e=1);break}}return e},a.prototype.gtn=function(t){return 1===this.cmpn(t)},a.prototype.gt=function(t){return 1===this.cmp(t)},a.prototype.gten=function(t){return this.cmpn(t)>=0},a.prototype.gte=function(t){return this.cmp(t)>=0},a.prototype.ltn=function(t){return-1===this.cmpn(t)},a.prototype.lt=function(t){return-1===this.cmp(t)},a.prototype.lten=function(t){return this.cmpn(t)<=0},a.prototype.lte=function(t){return this.cmp(t)<=0},a.prototype.eqn=function(t){return 0===this.cmpn(t)},a.prototype.eq=function(t){return 0===this.cmp(t)},a.red=function(t){return new w(t)},a.prototype.toRed=function(t){return n(!this.red,"Already a number in reduction context"),n(0===this.negative,"red works only with positives"),t.convertTo(this)._forceRed(t)},a.prototype.fromRed=function(){return n(this.red,"fromRed works only with numbers in reduction context"),this.red.convertFrom(this)},a.prototype._forceRed=function(t){return this.red=t,this},a.prototype.forceRed=function(t){return n(!this.red,"Already a number in reduction context"),this._forceRed(t)},a.prototype.redAdd=function(t){return n(this.red,"redAdd works only with red numbers"),this.red.add(this,t)},a.prototype.redIAdd=function(t){return n(this.red,"redIAdd works only with red numbers"),this.red.iadd(this,t)},a.prototype.redSub=function(t){return n(this.red,"redSub works only with red numbers"),this.red.sub(this,t)},a.prototype.redISub=function(t){return n(this.red,"redISub works only with red numbers"),this.red.isub(this,t)},a.prototype.redShl=function(t){return n(this.red,"redShl works only with red numbers"),this.red.shl(this,t)},a.prototype.redMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.mul(this,t)},a.prototype.redIMul=function(t){return n(this.red,"redMul works only with red numbers"),this.red._verify2(this,t),this.red.imul(this,t)},a.prototype.redSqr=function(){return n(this.red,"redSqr works only with red numbers"),this.red._verify1(this),this.red.sqr(this)},a.prototype.redISqr=function(){return n(this.red,"redISqr works only with red numbers"),this.red._verify1(this),this.red.isqr(this)},a.prototype.redSqrt=function(){return n(this.red,"redSqrt works only with red numbers"),this.red._verify1(this),this.red.sqrt(this)},a.prototype.redInvm=function(){return n(this.red,"redInvm works only with red numbers"),this.red._verify1(this),this.red.invm(this)},a.prototype.redNeg=function(){return n(this.red,"redNeg works only with red numbers"),this.red._verify1(this),this.red.neg(this)},a.prototype.redPow=function(t){return n(this.red&&!t.red,"redPow(normalNum)"),this.red._verify1(this),this.red.pow(this,t)};var m={k256:null,p224:null,p192:null,p25519:null};function v(t,e){this.name=t,this.p=new a(e,16),this.n=this.p.bitLength(),this.k=new a(1).iushln(this.n).isub(this.p),this.tmp=this._tmp()}function y(){v.call(this,"k256","ffffffff ffffffff ffffffff ffffffff ffffffff ffffffff fffffffe fffffc2f")}function x(){v.call(this,"p224","ffffffff ffffffff ffffffff ffffffff 00000000 00000000 00000001")}function b(){v.call(this,"p192","ffffffff ffffffff ffffffff fffffffe ffffffff ffffffff")}function _(){v.call(this,"25519","7fffffffffffffff ffffffffffffffff ffffffffffffffff ffffffffffffffed")}function w(t){if("string"==typeof t){var e=a._prime(t);this.m=e.p,this.prime=e}else n(t.gtn(1),"modulus must be greater than 1"),this.m=t,this.prime=null}function k(t){w.call(this,t),this.shift=this.m.bitLength(),this.shift%26!=0&&(this.shift+=26-this.shift%26),this.r=new a(1).iushln(this.shift),this.r2=this.imod(this.r.sqr()),this.rinv=this.r._invmp(this.m),this.minv=this.rinv.mul(this.r).isubn(1).div(this.m),this.minv=this.minv.umod(this.r),this.minv=this.r.sub(this.minv)}v.prototype._tmp=function(){var t=new a(null);return t.words=new Array(Math.ceil(this.n/13)),t},v.prototype.ireduce=function(t){var e,r=t;do{this.split(r,this.tmp),e=(r=(r=this.imulK(r)).iadd(this.tmp)).bitLength()}while(e>this.n);var n=e0?r.isub(this.p):r.strip(),r},v.prototype.split=function(t,e){t.iushrn(this.n,0,e)},v.prototype.imulK=function(t){return t.imul(this.k)},i(y,v),y.prototype.split=function(t,e){for(var r=Math.min(t.length,9),n=0;n>>22,i=a}i>>>=22,t.words[n-10]=i,0===i&&t.length>10?t.length-=10:t.length-=9},y.prototype.imulK=function(t){t.words[t.length]=0,t.words[t.length+1]=0,t.length+=2;for(var e=0,r=0;r>>=26,t.words[r]=i,e=n}return 0!==e&&(t.words[t.length++]=e),t},a._prime=function(t){if(m[t])return m[t];var e;if("k256"===t)e=new y;else if("p224"===t)e=new x;else if("p192"===t)e=new b;else{if("p25519"!==t)throw new Error("Unknown prime "+t);e=new _}return m[t]=e,e},w.prototype._verify1=function(t){n(0===t.negative,"red works only with positives"),n(t.red,"red works only with red numbers")},w.prototype._verify2=function(t,e){n(0==(t.negative|e.negative),"red works only with positives"),n(t.red&&t.red===e.red,"red works only with red numbers")},w.prototype.imod=function(t){return this.prime?this.prime.ireduce(t)._forceRed(this):t.umod(this.m)._forceRed(this)},w.prototype.neg=function(t){return t.isZero()?t.clone():this.m.sub(t)._forceRed(this)},w.prototype.add=function(t,e){this._verify2(t,e);var r=t.add(e);return r.cmp(this.m)>=0&&r.isub(this.m),r._forceRed(this)},w.prototype.iadd=function(t,e){this._verify2(t,e);var r=t.iadd(e);return r.cmp(this.m)>=0&&r.isub(this.m),r},w.prototype.sub=function(t,e){this._verify2(t,e);var r=t.sub(e);return r.cmpn(0)<0&&r.iadd(this.m),r._forceRed(this)},w.prototype.isub=function(t,e){this._verify2(t,e);var r=t.isub(e);return r.cmpn(0)<0&&r.iadd(this.m),r},w.prototype.shl=function(t,e){return this._verify1(t),this.imod(t.ushln(e))},w.prototype.imul=function(t,e){return this._verify2(t,e),this.imod(t.imul(e))},w.prototype.mul=function(t,e){return this._verify2(t,e),this.imod(t.mul(e))},w.prototype.isqr=function(t){return this.imul(t,t.clone())},w.prototype.sqr=function(t){return this.mul(t,t)},w.prototype.sqrt=function(t){if(t.isZero())return t.clone();var e=this.m.andln(3);if(n(e%2==1),3===e){var r=this.m.add(new a(1)).iushrn(2);return this.pow(t,r)}for(var i=this.m.subn(1),o=0;!i.isZero()&&0===i.andln(1);)o++,i.iushrn(1);n(!i.isZero());var s=new a(1).toRed(this),l=s.redNeg(),c=this.m.subn(1).iushrn(1),u=this.m.bitLength();for(u=new a(2*u*u).toRed(this);0!==this.pow(u,c).cmp(l);)u.redIAdd(l);for(var h=this.pow(u,i),f=this.pow(t,i.addn(1).iushrn(1)),p=this.pow(t,i),d=o;0!==p.cmp(s);){for(var g=p,m=0;0!==g.cmp(s);m++)g=g.redSqr();n(m=0;n--){for(var c=e.words[n],u=l-1;u>=0;u--){var h=c>>u&1;i!==r[0]&&(i=this.sqr(i)),0!==h||0!==o?(o<<=1,o|=h,(4===++s||0===n&&0===u)&&(i=this.mul(i,r[o]),s=0,o=0)):s=0}l=26}return i},w.prototype.convertTo=function(t){var e=t.umod(this.m);return e===t?e.clone():e},w.prototype.convertFrom=function(t){var e=t.clone();return e.red=null,e},a.mont=function(t){return new k(t)},i(k,w),k.prototype.convertTo=function(t){return this.imod(t.ushln(this.shift))},k.prototype.convertFrom=function(t){var e=this.imod(t.mul(this.rinv));return e.red=null,e},k.prototype.imul=function(t,e){if(t.isZero()||e.isZero())return t.words[0]=0,t.length=1,t;var r=t.imul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),a=i;return i.cmp(this.m)>=0?a=i.isub(this.m):i.cmpn(0)<0&&(a=i.iadd(this.m)),a._forceRed(this)},k.prototype.mul=function(t,e){if(t.isZero()||e.isZero())return new a(0)._forceRed(this);var r=t.mul(e),n=r.maskn(this.shift).mul(this.minv).imaskn(this.shift).mul(this.m),i=r.isub(n).iushrn(this.shift),o=i;return i.cmp(this.m)>=0?o=i.isub(this.m):i.cmpn(0)<0&&(o=i.iadd(this.m)),o._forceRed(this)},k.prototype.invm=function(t){return this.imod(t._invmp(this.m).mul(this.r2))._forceRed(this)}}("undefined"==typeof e||e,this)},{buffer:91}],83:[function(t,e,r){"use strict";e.exports=function(t){var 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-===============================================================================================================
-[](https://travis-ci.org/UUPharmacometrics/xpose) [](https://ci.appveyor.com/project/guiastrennec/xpose) [](https://CRAN.R-project.org/package=xpose) [](https://codecov.io/gh/UUPharmacometrics/xpose) [](https://CRAN.R-project.org/package=xpose)
+# xpose 
-##### Individual plots
+#### Individual plots
``` r
ind_plots(xpdb, page = 1)
@@ -113,7 +126,7 @@ ind_plots(xpdb, page = 1)
-##### Visual predictive checks
+#### Visual predictive checks
``` r
xpdb %>%
@@ -123,7 +136,7 @@ xpdb %>%
-##### Distribution plots
+#### Distribution plots
``` r
eta_distrib(xpdb, labeller = 'label_value')
@@ -131,7 +144,7 @@ eta_distrib(xpdb, labeller = 'label_value')
-##### Minimization diagnostics
+#### Minimization diagnostics
``` r
prm_vs_iteration(xpdb, labeller = 'label_value')
@@ -139,14 +152,22 @@ prm_vs_iteration(xpdb, labeller = 'label_value')
-##### And many other features!
+## Recommended reading
+
+The [xpose website](https://UUPharmacometrics.github.io/xpose/) contains
+several useful articles to make full use of xpose
-### Recommended reading
+When working with xpose, a working knowledge of ggplot2 is recommended.
+Help for ggplot2 can be found in:
-The [xpose website](https://UUPharmacometrics.github.io/xpose/) contains several useful articles to make full use of xpose
+ - The ggplot2 [documentation](https://docs.ggplot2.org/current/)
+ - The ggplot2 [mailing
+ list](https://groups.google.com/forum/?fromgroups#!forum/ggplot2)
+ - Internet resources (stack overflow, etc.)
-When working with xpose, a working knowledge of ggplot2 is recommended. Help for ggplot2 can be found in:
+## Contribute
-- The ggplot2 [documentation](http://docs.ggplot2.org/current/)
-- The ggplot2 [mailing list](https://groups.google.com/forum/?fromgroups#!forum/ggplot2)
-- Internet resources (stack overflow, etc.)
+Please note that the xpose project is released with a [Contributor Code
+of Conduct](.github/CODE_OF_CONDUCT.md) and [contributing
+guidelines](.github/CONTRIBUTING.md). By contributing to this project,
+you agree to abide these.
diff --git a/ROADMAP.md b/ROADMAP.md
deleted file mode 100644
index 94d760ff..00000000
--- a/ROADMAP.md
+++ /dev/null
@@ -1,60 +0,0 @@
-# xpose development roadmap
-
-## New features
-- [ ] Add outliers labeling features e.g. `aes(color = outlier(CWRES, ±6))`
-- [ ] Add feature to exp-transform plot scales as `exp = "xy"`
-- [ ] Add reference distribution in eta_distrib when `guide = TRUE`
-- [ ] Add data checkout diagnostics
-- [ ] Add support for time-to-event (TTE) data
-- [ ] Add support for categorical data
-- [ ] Add gam and diagnostics
-- [ ] Add diagnostics for bootstrap, nonpb
-- [ ] Add diagnostics for cdd
-- [ ] Add diagnostics for frem
-- [ ] Add diagnostics for lasso
-- [ ] Add diagnostics for llp
-- [ ] Add diagnostics for mcmp
-- [ ] Add diagnostics for mimp
-- [ ] Add diagnostics for npc
-- [ ] Add diagnostics for npde
-- [ ] Add diagnostics for randtest
-- [ ] Add diagnostics for resmod
-- [ ] Add diagnostics for scm, boot_scm, xv_scm
-- [ ] Add diagnostics for simeval
-- [ ] Add diagnostics for sir
-- [ ] Add diagnostics for sse
-- [ ] Add diagnostics to compare several runs e.g. `compare(xpdb1, xpdb2)`
-
-
-## Improvements
-### High priority
-- [ ] Update xpose functions to use rlang instead of the standard evaluation version of tidyverse functions (e.g. `mutate_()`)
-- [ ] Collect (from the lst file) and make use of parameter labels and units in plot labels
-- [ ] Get shrinkage in summary from PsN shrinkage and .shk file
-- [ ] Improve `get_file()` to handle 2x same method, same issue with all file dependent functions
-- [ ] Improve integration of additional modeling tools by using more generic functions
-- [ ] Improve plotting of single line point when surrounded by NA (vpc/ind_plots):
-
- 1. Identify line points that are "alone"
- 1. Have a special `geom_point()` mapped after the line aesthetics that is only plotted if single points are required?
-
-
-### Low priority
-- [ ] Improve the use of color, shape scales in `ind_plots()` and `vpc()`, e.g. add color scale options to the xp_theme
-- [ ] Find a way to add doses (bolus and infusion) to individual plots (shaded areas and/or vertical lines)
-- [ ] Improve `xp_theme()` use with a + method as in ggplot2 (e.g. [here](https://github.com/tidyverse/ggplot2/blob/master/R/theme.r>))
-- [ ] Allow `eta_*()` functions to read ETA values from table data or .phi file?
-- [ ] Should `@nobs` `@nsim` `@nind` values be updated when using filtering of the data?
-- [ ] Use the `kappa()` function to calculate the condition number directly?
-
-
-## Satelite packages development
-- [ ] *xpose_shiny*: a click based shiny interface for xpose
-- [ ] *xpose_monolix*: add support for monolix *[help wanted]*
-- [ ] others ...
-
-
-## Will not do
-- [x] Use [delayed assignment](https://github.com/hadley/pryr/blob/master/R/assign-delayed.r) for data importation
-- [x] Use general `aes` assignment (e.g. `color =` will impact point + lines) targeting `ggplot()`
-
diff --git a/appveyor.yml b/appveyor.yml
index 85538d10..250a411b 100644
--- a/appveyor.yml
+++ b/appveyor.yml
@@ -10,10 +10,12 @@ init:
install:
ps: Bootstrap
-# Adapt as necessary starting from here
-
cache:
- - packages -> appveyor.yml
+ - C:\RLibrary
+
+# Adapt as necessary starting from here
+environment:
+ USE_RTOOLS: true
build_script:
- travis-tool.sh install_deps
diff --git a/data-raw/xpdb_ex_pk.R b/data-raw/xpdb_ex_pk.R
old mode 100644
new mode 100755
index b6afbefe..bc6338c9
--- a/data-raw/xpdb_ex_pk.R
+++ b/data-raw/xpdb_ex_pk.R
@@ -13,6 +13,6 @@ xpdb_ex_pk <- xpose_data(runno = '001', dir = 'inst/extdata/', quiet = FALSE)
xpdb_ex_pk$summary$value[xpdb_ex_pk$summary$label == 'dir'] <- 'analysis/models/pk/'
xpdb_ex_pk$options$dir <- 'analysis/models/pk/'
attr(xpdb_ex_pk$code, 'dir') <- 'analysis/models/pk/'
-
+xpdb_ex_pk <- xpose::as.xpdb(xpdb_ex_pk)
# Export rda to data folder
save(xpdb_ex_pk, file = 'data/xpdb_ex_pk.rda', compress = 'xz')
diff --git a/data/xpdb_ex_pk.rda b/data/xpdb_ex_pk.rda
old mode 100644
new mode 100755
index e396b27c..9a5c062f
Binary files a/data/xpdb_ex_pk.rda and b/data/xpdb_ex_pk.rda differ
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
new file mode 100644
index 00000000..8266c503
--- /dev/null
+++ b/docs/CODE_OF_CONDUCT.html
@@ -0,0 +1,234 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -172,25 +190,25 @@@@ -200,7 +218,7 @@
+
+
+
+
+
@@ -206,14 +224,14 @@
+
@@ -261,16 +279,16 @@
--
-
-
--
--
--
-
--
--
