crispr-class1.in.json

{
    "host_tree": "(((((('Clostridium kluyveri DSM 555',('Bacillus halodurans C-125','Staphylococcus epidermidis')'Bacillales')'Firmicutes','Rhodococcus jostii RHA1')'Actinobacteriota+Firmicutes','Thermoflexia bacterium')'Actinobacteriota+Firmicutes+Chloroflexota',('Cyanothece sp. PCC 8802','Synechocystis sp. 6803')'Cyanobacteria')'Terrabacteria','Thermotoga lettingae TMO')'DST+Terrabacteria',('Candidatus Scalindua brodae',('Geobacter sulfurreducens',('Thioalkalivibrio sp. K90mix',('Shewanella putrefaciens CN-32',('Vibrio crassostreae J5 20',('Yersinia pseudotuberculosis','Escherichia coli K12')'Enterobacteriales')'Vibrionales+Enterobacteriales')'Alteromonadales+Vibrionales+Enterobacteriales')'Gammaproteobacteria')'Proteobacteria')'Gracilicutes')'BACTERIA';",
    "associate_tree": "(((I-B[&host='Clostridium kluyveri DSM 555',contents='{''6'',''8'',''7'',''5'',''3\"'',''3\\''',''4'',''1'',''2''}'],I-C[&host='Bacillus halodurans C-125',contents='{''3\"'',''3\\''',''5'',''8'',''7'',''4'',''1'',''2''}'],I-G[&host='Geobacter sulfurreducens',contents='{''3\\''',''3\"'',''8'',''7'',''5'',''6'',''4'',''1'',''2''}']),I-D[&host='Cyanothece sp. PCC 8802',contents='{''3\\''',''10'',''7'',''5'',''6'',''4'',''1'',''2''}'],(I-E[&host='Escherichia coli K12',contents='{''3\"'',''3\\''',''8'',''11'',''7'',''5'',''6'',''1'',''2''}'],((I-F1[&host='Yersinia pseudotuberculosis',contents='{''1'',''2'',''3\"'',''3\\''',''8'',''5'',''7'',''6''}'],I-F3[&host='Vibrio crassostreae J5 20',contents='{''8'',''5'',''7'',''6''}']),I-F2[&host='Shewanella putrefaciens CN-32',contents='{''1'',''2'',''3\"'',''3\\''',''7'',''5'',''6''}'])))TypeI,((IV-A[&host='Thioalkalivibrio sp. K90mix',contents='{''6'',''8'',''7'',''5''}'],IV-B[&host='Rhodococcus jostii RHA1',contents='{''8'',''11'',''7'',''5''}']),IV-C[&host='Thermoflexia bacterium',contents='{''10'',''11'',''7'',''5''}'])TypeIV,((III-A[&host='Staphylococcus epidermidis',contents='{''6'',''10'',''11'',''7'',''5'',''1'',''2''}'],(III-D[&host='Synechocystis sp. 6803',contents='{''10'',''7'',''5'',''11''}'],III-E[&host='Candidatus Scalindua brodae',contents='{''11'',''7'',''1'',''2''}'])),III-F[&host='Thermotoga lettingae TMO',contents='{''10'',''5'',''11'',''7''}'])TypeIII)Class1;"
}