GitHub - UofABioinformaticsHub/Trace_NestedAmpliconSeqAnalysis

Scripts for inferring consensus gene sequences of NGS data generated using A novel Nested Amplicon Sequencing Approach by Trace Akankunda

Name		Name	Last commit message	Last commit date
Latest commit History 11 Commits
0_Script_For_Analysing_Rawdata.sh		0_Script_For_Analysing_Rawdata.sh
1_RemoveContaminants_CountNbReads.sh		1_RemoveContaminants_CountNbReads.sh
2_Cluster_RemoveSmallClusters.sh		2_Cluster_RemoveSmallClusters.sh
3_MergeOverlapSequence.R		3_MergeOverlapSequence.R
4_MapToSampleSpecificRef.sh		4_MapToSampleSpecificRef.sh
5_MultipleAlignment_Tree.sh		5_MultipleAlignment_Tree.sh
6_MapToSampleSpecificRef_checkReplicates.sh		6_MapToSampleSpecificRef_checkReplicates.sh
Cluster_RemoveSmallClusters.R		Cluster_RemoveSmallClusters.R
README.md		README.md
Species.txt		Species.txt
checkReplicates.R		checkReplicates.R
runR.sh		runR.sh
submitJobs.sh		submitJobs.sh
utils.R		utils.R

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