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It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2024-07-07 00:43:19.
update was on 2024-07-14 00:44:04.

<div class="cell">

</div>

1. **An agent-based model for cell microenvironment simulation using
FLAMEGPU2.**
1. **Dissecting the Spatially Restricted Effects of
Microenvironment-Mediated Resistance on Targeted Therapy
Responses.**

Borau C, Chisholm R, Richmond P, Walker D.
Miti T, Desai B, Miroshnychenko D, Basanta D, Marusyk A.

Comput Biol Med. 2024 Jul 5;179:108831. doi:
10.1016/j.compbiomed.2024.108831. Online ahead of print.
Cancers (Basel). 2024 Jun 29;16(13):2405. doi:
10.3390/cancers16132405.

> This work presents an advanced agent-based model developed within
> the FLAMEGPU2 framework, aimed at simulating the intricate
> dynamics of cell microenvironments. …Through four example
> applications, we demonstrate the model’s versatility in capt …
> To address this problem, we integrated spatial inferences of
> proliferation-death dynamics from an experimental animal model of
> targeted therapy responses with spatial mathematical modeling. …
2. **HPVsim: An agent-based model of HPV transmission and cervical
disease.**
2. **In Vivo PET Detection of Lung Micrometastasis in Mice by Targeting
Endothelial VCAM-1 Using a Dual-Contrast PET/MRI Probe.**

Stuart RM, Cohen JA, Kerr CC, Mathur P; National Disease Modelling
Consortium of India; Abeysuriya RG, Zimmermann M, Rao DW, Boudreau
MC, Lee S, Yang L, Klein DJ.
Melemenidis S, Knight JC, Kersemans V, Perez-Balderas F, Zarghami N,
Soto MS, Cornelissen B, Muschel RJ, Sibson NR.

PLoS Comput Biol. 2024 Jul 5;20(7):e1012181. doi:
10.1371/journal.pcbi.1012181. Online ahead of print.
Int J Mol Sci. 2024 Jun 28;25(13):7160. doi: 10.3390/ijms25137160.

> Open-source modelling tools are needed to shift the capacity for
> such evaluations in-country. Here, we introduce the Human
> papillomavirus simulator (HPVsim), a new open-source software
> package for creating flexible agent-based models parameterised
> with …
> We have previously demonstrated that an antibody-targeted MRI
> contrast agent based on microparticles of iron oxide (MPIO; 1 mum
> diameter) enables the imaging of endothelial vascular cell
> adhesion molecule-1 (VCAM-1). Using a mouse model of lung
> metastasis, up …
3. **ENERGY Pro: Spatially explicit agent-based model on achieving
positive energy districts.**
3. **Agent-based model predicts that layered structure and 3D movement
work synergistically to reduce bacterial load in 3D in vitro models
of tuberculosis granuloma.**

Derkenbaeva E, Hofstede GJ, van Leeuwen E, Halleck Vega S, Wolfers
J.
Petrucciani A, Hoerter A, Kotze L, Du Plessis N, Pienaar E.

MethodsX. 2024 May 28;12:102779. doi: 10.1016/j.mex.2024.102779.
eCollection 2024 Jun.
PLoS Comput Biol. 2024 Jul 12;20(7):e1012266. doi:
10.1371/journal.pcbi.1012266. Online ahead of print.

> This article describes the ENERGY Pro agent-based model using the
> Overview, Design Concept, and Details + Human Decision-making
> (ODD+D protocol). …The article also describes sensitivity
> analysis, validation results, and how to use and adapt the model …
> Previously we developed a biomimetic 3D spheroid granuloma model
> that controls bacteria better than a traditional monolayer culture
> counterpart. We used agent-based simulations to predict the
> mechanistic reason for this difference. …
4. **Influential individuals can promote prosocial practices in
heterogeneous societies: a mathematical and agent-based model.**
4. **Correction to “A seven-step guide to spatial, agent-based
modelling of tumour evolution”.**

Crabtree SA, Wren CD, Dixit A, Levin SA.
\[No authors listed\]

PNAS Nexus. 2024 Jul 2;3(7):pgae224. doi: 10.1093/pnasnexus/pgae224.
Evol Appl. 2024 Jul 9;17(7):e13756. doi: 10.1111/eva.13756.
eCollection 2024 Jul.

> We construct a general theoretical framework to examine a
> game-theoretic model to assess the ease of achieving a cooperative
> outcome. We then build a dynamic agent-based model to examine
> three distinct governance types in a heterogenous population: mon
> …
5. **Deep learning-based dimensional emotion recognition for
conversational agent-based cognitive behavioral therapy.**

5. **Use of Individual-Based Mathematical Modelling to Understand More
About Antibiotic Resistance Within-Host.**
Striegl J, Richter JW, Grossmann L, Bråstad B, Gotthardt M, Rück C,
Wallert J, Loitsch C.

Saula AY, Rowlatt C, Bowness R.
PeerJ Comput Sci. 2024 Jun 24;10:e2104. doi: 10.7717/peerj-cs.2104.
eCollection 2024.

Methods Mol Biol. 2024;2833:93-108. doi:
10.1007/978-1-0716-3981-8_10.
> This model significantly outperforms existing state-of-the-art
> models in detecting the dimensions of valence, arousal, and
> dominance, achieving a Pearson correlation coefficient of r =
> 0.90, r = 0.77, and r = 0.64, respectively. Furthermore, a
> feasibility study invo …
> To model complex systems, individual-based models (IBMs),
> sometimes called “agent-based models” (ABMs), describe a
> simplification of the system through an adequate representation of
> the elements. …Events that seldom occur such as the accumulat …
6. **Modeling the Impact of Proactive Community Case Management on
Reducing Confirmed Malaria Cases in Sub-Saharan African Countries.**

6. **Epidemic spreading on spatial higher-order network.**
Wang Y, Wang X, Gurbaxani B, Gutman JR, Keskinocak P, Smalley HK,
Thwing J.

Gu W, Qiu Y, Li W, Zhang Z, Liu X, Song Y, Wang W.
Am J Trop Med Hyg. 2024 Jul 9:tpmd230844. doi:
10.4269/ajtmh.23-0844. Online ahead of print.

Chaos. 2024 Jul 1;34(7):073105. doi: 10.1063/5.0219759.
> Pilot experiments have shown the potential of ProCCM for
> controlling malaria transmission; identifying the best strategy
> for administering ProCCM in terms of interval timings and number
> of sweeps could lead to further reductions in malaria infections.
> We developed an agent …
> Therefore, this study attempts to model and simulate higher-order
> interactions among mobile populations and explore their impact on
> epidemic transmission. This study simulated the spread of the
> epidemic in a spatial high-order network based on agent-based …
7. **Building multiscale models with PhysiBoSS, an agent-based modeling
tool.**

7. **PhysiCell Studio: a graphical tool to make agent-based modeling
more accessible.**
Ruscone M, Checcoli A, Heiland R, Barillot E, Macklin P, Calzone L,
Noël V.

Heiland R, Bergman D, Lyons B, Waldow G, Cass J, Lima da Rocha H,
Ruscone M, Noël V, Macklin P.
ArXiv \[Preprint\]. 2024 Jun 26:arXiv:2406.18371v1.

GigaByte. 2024 Jun 19;2024:gigabyte128. doi: 10.46471/gigabyte.128.
eCollection 2024.
> Multiscale models provide a unique tool for studying complex
> processes that study events occurring at different scales across
> space and time. …This article introduces three examples of
> multiscale models which rely on the framework PhysiBoSS, an add-on
> of PhysiCell …
> In the best case, the model will be defined using some format
> specification - a markup language - that will provide easy model
> sharing (and a minimal step toward reproducibility). PhysiCell is
> an open-source, physics-based multicellular simulation framework
> with an …
8. **Balancing long-term and short-term strategies in a sustainability
game.**
8. **An agent-based model for cell microenvironment simulation using
FLAMEGPU2.**

Bertolotti F, Roman S.
Borau C, Chisholm R, Richmond P, Walker D.

iScience. 2024 May 27;27(6):110020. doi: 10.1016/j.isci.2024.110020.
eCollection 2024 Jun 21.
Comput Biol Med. 2024 Jul 5;179:108831. doi:
10.1016/j.compbiomed.2024.108831. Online ahead of print.

> This article aims to enhance the understanding of this issue by
> analyzing how sustainability concerns change over time by means of
> a game, and the effect of this variation on the final status of a
> system. Leveraging insights from the game, we implement an
> agent-based …
> This work presents an advanced agent-based model developed within
> the FLAMEGPU2 framework, aimed at simulating the intricate
> dynamics of cell microenvironments. …Through four example
> applications, we demonstrate the model’s versatility in capt …
9. **Minimal cellular automaton model with heterogeneous cell sizes
predicts epithelial colony growth.**
9. **HPVsim: An agent-based model of HPV transmission and cervical
disease.**

Lange S, Schmied J, Willam P, Voss-Böhme A.
Stuart RM, Cohen JA, Kerr CC, Mathur P; National Disease Modelling
Consortium of India; Abeysuriya RG, Zimmermann M, Rao DW, Boudreau
MC, Lee S, Yang L, Klein DJ.

J Theor Biol. 2024 Jun 27:111882. doi: 10.1016/j.jtbi.2024.111882.
Online ahead of print.
PLoS Comput Biol. 2024 Jul 5;20(7):e1012181. doi:
10.1371/journal.pcbi.1012181. Online ahead of print.

> Cellular automata (CA) have been employed in the past as
> numerically efficient mathematical models to study the dynamics of
> cell ensembles, but they are not suitable to explore the origins
> of contact inhibition as such agent-based models assume fixed c …
> Open-source modelling tools are needed to shift the capacity for
> such evaluations in-country. Here, we introduce the Human
> papillomavirus simulator (HPVsim), a new open-source software
> package for creating flexible agent-based models parameterised
> with …
10. **Models of bee responses to land use and land cover changes in
agricultural landscapes - a review and research agenda.**
10. **ENERGY Pro: Spatially explicit agent-based model on achieving
positive energy districts.**

Rouabah A, Rabolin-Meinrad C, Gay C, Therond O.
Derkenbaeva E, Hofstede GJ, van Leeuwen E, Halleck Vega S, Wolfers
J.

Biol Rev Camb Philos Soc. 2024 Jun 28. doi: 10.1111/brv.13109.
Online ahead of print.
MethodsX. 2024 May 28;12:102779. doi: 10.1016/j.mex.2024.102779.
eCollection 2024 Jun.

> Here, we reviewed 42 studies that developed non-correlative models
> to explore the impact of land use and land cover changes on bee
> populations, and synthesised information about the modelled
> systems, modelling approaches, and key model characteristics …
> This article describes the ENERGY Pro agent-based model using the
> Overview, Design Concept, and Details + Human Decision-making
> (ODD+D protocol). …The article also describes sensitivity
> analysis, validation results, and how to use and adapt the model …
## Code of Conduct

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