diff --git a/README.md b/README.md index a0d42d0..ec7d140 100644 --- a/README.md +++ b/README.md @@ -9,146 +9,153 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2023-09-17 00:35:57. +update was on 2023-09-24 00:36:15.
-1. **Evolution of HIV virulence in response to disease-modifying - vaccines: A modeling study.** +1. **Study of vascular sclerosing agent based on the dual mechanism of + vascular endothelial cell damage-plasmin system inhibition.** - Reid MC, Mittler JE, Murphy JT, Stansfield SE, Goodreau SM, - Abernethy N, Herbeck JT. + Ma J, Chen Y, Zhang K, Yang T, Xie H, Yang X, Ding P. - Vaccine. 2023 Sep 13:S0264-410X(23)01027-7. doi: - 10.1016/j.vaccine.2023.08.071. Online ahead of print. + Biochem Biophys Res Commun. 2023 Sep 15;680:135-140. doi: + 10.1016/j.bbrc.2023.09.035. Online ahead of print. - > We explored the potential for such virulence evolution with a - > disease-modifying HIV-1 vaccine in an agent-based stochastic - > epidemic model of HIV in United States men who have sex with men - > (MSM). In the model, vaccinated agents received no protection ag … + > In this study, we have developed a novel cationic surfactant-based + > sclerosing agent (POL-TA) by conjugating the plasmin inhibitor + > tranexamic acid (TA) with a nonionic surfactant polidocanol (POL) + > through an ester bond. …The inhibitory effects of POL-TA on the + > plas … -2. **Three-state opinion model with mobile agents.** +2. **Generalized morality culturally evolves as an adaptive heuristic + in large social networks.** - Ferri I, Gaya-Àvila A, Díaz-Guilera A. + Jackson JC, Halberstadt J, Takezawa M, Liew K, Smith K, Apicella C, + Gray K. - Chaos. 2023 Sep 1;33(9):093121. doi: 10.1063/5.0152674. + J Pers Soc Psychol. 2023 Sep 21. doi: 10.1037/pspa0000358. Online + ahead of print. - > We study an agent-based opinion model with two extreme (opposite) - > opinion states and a neutral intermediate one. We adjust the - > relative degree of conviction between extremists and neutrals - > through a dimensionless parameter called the “neutrality - > parameter” to … + > Why do we even use words like “moral” and “immoral”? We explore + > these questions with a new model of how people perceive moral + > character. We propose that people vary in the extent to which they + > perceive moral character as “localized” (varying along many + > contextually embedde … -3. **Deconstructing the effects of stochasticity on transmission of - hospital-acquired infections in ICUs.** +3. **Diverse mutant selection windows shape spatial heterogeneity in + evolving populations.** - Haghpanah F, Lin G, Klein E; CDC MInD-Healthcare Program. + King ES, Pierce B, Hinczewski M, Scott JG. - R Soc Open Sci. 2023 Sep 13;10(9):230277. doi: 10.1098/rsos.230277. - eCollection 2023 Sep. + bioRxiv. 2023 Sep 6:2023.03.09.531899. doi: + 10.1101/2023.03.09.531899. Preprint. - > In this study, we investigated the impact of uncertainty - > (epistemic and aleatory) on nosocomial transmission of HAIs by - > evaluating the effects of stochasticity on the detectability of - > seasonality of admission prevalence. For doing so, we developed an - > agent-based … + > In this work, we show how N -allele fitness seascapes allow for N + > 2 (N- 1) unique MSW comparisons. In spatial drug diffusion models, + > we demonstrate how fitness seascapes reveal spatially + > heterogeneous MSWs, extending the MSW model to more accurately + > reflect the sele … -4. **Simulating the impact of particulate matter exposure on - health-related behaviour: A comparative study of stochastic - modelling and personal monitoring data.** +4. **The impact of preventive treatment for multidrug- and + rifampin-resistant tuberculosis exceeds trial-based estimates.** - Novak R, Robinson JA, Kanduč T, Sarigiannis D, Kocman D. + Kasaie P, Pennington J, Gupta A, Dowdy DW, Kendall EA. - Health Place. 2023 Sep 12;83:103111. doi: - 10.1016/j.healthplace.2023.103111. Online ahead of print. + Clin Infect Dis. 2023 Sep 19:ciad557. doi: 10.1093/cid/ciad557. + Online ahead of print. - > While low-cost personal monitors have some drawbacks, recent - > developments have shown that they can provide fairly accurate and - > fit-for-purpose data. Comparing a stochastic, i.e., agent-based - > model (ABM), with environmental, biometric and activity data, - > collec … + > The potential benefits of delivering TPT to MDR/RR-TB contacts + > extend beyond the outcomes that clinical trials can measure. + > METHODS: We developed an agent-based, household-structured TB and + > MDR/RR-TB transmission model, calibrated to an illustrative + > setting i … -5. **‘Evolutionary poker’: an agent-based model of interactome - emergence and epistasis tested against Lenski’s long-term E. coli - experiments.** +5. **Policy evaluation of economic - environmental tradeoffs in + regulating industrial water use: An agent-based model.** - Root-Bernstein RS, Bernstein MI. + Sun D, Zhang M, Jung D. - J Physiol. 2023 Sep 14. doi: 10.1113/JP284421. Online ahead of - print. + J Environ Manage. 2023 Sep 16;346:118988. doi: + 10.1016/j.jenvman.2023.118988. Online ahead of print. - > A simple agent-based model is presented that produces results - > matching the experimental data found by Lenski’s group for 50,000 - > generations of Escherichia coli bacteria under continuous - > selective pressure. Although various mathematical models ha … + > Therefore, scientifically regulating the water consumption and + > sewage discharge of industrial enterprises can effectively + > alleviate water scarcity and pollution problems. By establishing a + > multi-agent model, this study simulates the water use behavior of + > industrial … -6. **Elongating, entwining, and dragging: mechanism for adaptive - locomotion of tubificine worm blobs in a confined environment.** +6. **Minority-group incubators and majority-group reservoirs support + the diffusion of climate change adaptations.** - Mikami T, Wakita D, Kobayashi R, Ishiguro A, Kano T. + Turner MA, Singleton AL, Harris MJ, Harryman I, Lopez CA, Arthur RF, + Muraida C, Jones JH. - Front Neurorobot. 2023 Aug 29;17:1207374. doi: - 10.3389/fnbot.2023.1207374. eCollection 2023. + Philos Trans R Soc Lond B Biol Sci. 2023 Nov 6;378(1889):20220401. + doi: 10.1098/rstb.2022.0401. Epub 2023 Sep 18. - > We found the blob deformed and passed through a narrow passage - > using environmental heterogeneities. Based on these behavioral - > findings, we constructed a simple two-dimensional agent-based - > model wherein the flexible body of a worm was described as a cro … + > Current theory suggests that the heterogeneity of metapopulation + > structure can help adaptations diffuse throughout a population. In + > this paper, we develop an agent-based model of the spread of + > adaptations in populations with minority-majority metapopulation s + > … -7. **Systems-Level Evaluation of Safe Routes to School Policies in El - Paso, Texas: A Modeling Study on Health and Economic Outcomes.** +7. **The impacts of climate change, energy policy and traditional + ecological practices on future firewood availability for Diné + (Navajo) People.** - Garney W, Panjwani S, Curran L, Enderle J, King L, O’Neil D, Li Y. + Magargal K, Wilson K, Chee S, Campbell MJ, Bailey V, Dennison PE, + Anderegg WRL, Cachelin A, Brewer S, Codding BF. - Fam Community Health. 2023 Oct-Dec 01;46(Suppl 1):S22-S29. doi: - 10.1097/FCH.0000000000000374. + Philos Trans R Soc Lond B Biol Sci. 2023 Nov 6;378(1889):20220394. + doi: 10.1098/rstb.2022.0394. Epub 2023 Sep 18. - > This study used systems science methods to predict long-term - > health and economic impact of SRTS among school-age children in El - > Paso County, Texas. We developed an agent-based model containing 2 - > modules: the pedestrian injury module and the CVD module. …The … + > However, there are two acute problems: first, climate + > change-induced drought will diminish local sources of firewood; + > second, policies aimed at reducing reliance on + > greenhouse-gas-emitting energy sources may limit alternatives like + > coal for home use, thereby increasing firewood d … -8. **Semiparametric inference of effective reproduction number dynamics - from wastewater pathogen surveillance data.** +8. **Evolution of HIV virulence in response to disease-modifying + vaccines: A modeling study.** - Goldstein IH, Parker DM, Jiang S, Minin VM. + Reid MC, Mittler JE, Murphy JT, Stansfield SE, Goodreau SM, + Abernethy N, Herbeck JT. - ArXiv. 2023 Aug 31:arXiv:2308.15770v2. Preprint. + Vaccine. 2023 Sep 13:S0264-410X(23)01027-7. doi: + 10.1016/j.vaccine.2023.08.071. Online ahead of print. - > As a byproduct of our primary goal, we also produce a new model - > for estimating the effective reproduction number from case data - > using the same framework. We test this modeling framework in an - > agent-based simulation study with a realistic data generatin … + > We explored the potential for such virulence evolution with a + > disease-modifying HIV-1 vaccine in an agent-based stochastic + > epidemic model of HIV in United States men who have sex with men + > (MSM). In the model, vaccinated agents received no protection ag … -9. **Circulation of Respiratory Viruses in the City: Towards an - Agent-Based Ecosystem model.** +9. **Three-state opinion model with mobile agents.** - Vlad AI, Romanyukha AA, Sannikova TE. + Ferri I, Gaya-Àvila A, Díaz-Guilera A. - Bull Math Biol. 2023 Sep 10;85(10):100. doi: - 10.1007/s11538-023-01203-x. + Chaos. 2023 Sep 1;33(9):093121. doi: 10.1063/5.0152674. - > Mathematical models play an important role in management of - > outbreaks of acute respiratory infections (ARI). …These viruses - > have been studied in detail, including the course of infection and - > immune defense mechanisms. We developed an agent-based model … + > We study an agent-based opinion model with two extreme (opposite) + > opinion states and a neutral intermediate one. We adjust the + > relative degree of conviction between extremists and neutrals + > through a dimensionless parameter called the “neutrality + > parameter” to … -10. **Synthetic symmetry breaking and programmable multicellular - structure formation.** +10. **Deconstructing the effects of stochasticity on transmission of + hospital-acquired infections in ICUs.** - Wauford N, Patel A, Tordoff J, Enghuus C, Jin A, Toppen J, Kemp ML, - Weiss R. + Haghpanah F, Lin G, Klein E; CDC MInD-Healthcare Program. - Cell Syst. 2023 Sep 8:S2405-4712(23)00216-8. doi: - 10.1016/j.cels.2023.08.001. Online ahead of print. + R Soc Open Sci. 2023 Sep 13;10(9):230277. doi: 10.1098/rsos.230277. + eCollection 2023 Sep. - > We use this switch to control the cell-cell adhesion properties of - > cells committed to each fate.(10)(,)(11) We generate a wide - > variety of 3D morphologies from a monoclonal population and - > develop a computational model showing high concordance with - > experimental results, yiel … + > In this study, we investigated the impact of uncertainty + > (epistemic and aleatory) on nosocomial transmission of HAIs by + > evaluating the effects of stochasticity on the detectability of + > seasonality of admission prevalence. For doing so, we developed an + > agent-based … ## Code of Conduct