Skip to content

Commit

Permalink
Commit from GitHub Actions (Build it)
Browse files Browse the repository at this point in the history
  • Loading branch information
@gvegayon
gvegayon committed Aug 11, 2024
1 parent e29010a commit 8dce77a
Showing 1 changed file with 96 additions and 95 deletions.
191 changes: 96 additions & 95 deletions README.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -9,143 +9,144 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2024-08-04 00:44:06.
update was on 2024-08-11 00:44:58.

<div class="cell">

</div>

1. **Developing an Agent-Based Model that Predicts Listeria spp.
Transmission to Assess Listeria Control Strategies in Retail
Stores.**
1. **Modeling the population health impact of accurate and inaccurate
perceptions of harm from nicotine.**

Jung Y, Qian C, Barnett-Neefs C, Ivanek R, Wiedmann M.
Hannel T, Wei L, Muhammad-Kah RS, Largo EG, Sarkar M.

J Food Prot. 2024 Jul 31:100337. doi: 10.1016/j.jfp.2024.100337.
Online ahead of print.
Harm Reduct J. 2024 Aug 9;21(1):145. doi:
10.1186/s12954-024-01059-x.

> However, limited tools are available for retailers to assess
> practices that can enhance control of Listeria transmission to
> fresh produce. Therefore, we developed an agent-based model that
> can simulate Listeria transmission in retail produce sections to
> optim …
> We assessed the population health impact associated with nicotine
> perceptions. METHODS: Using a previously validated agent-based
> model to the U.S. population, we analyzed nationally
> representative data from the Population Assessment of Tobacco and
> Health (PAT …
2. **Control of complex systems with generalized embedding and
empirical dynamic modeling.**
2. **Interacting particle models on the impact of spatially
heterogeneous human behavioral factors on dynamics of infectious
diseases.**

Park J, Sugihara G, Pao G.
Xiong Y, Wang C, Zhang Y.

PLoS One. 2024 Aug 1;19(8):e0305408. doi:
10.1371/journal.pone.0305408. eCollection 2024.
PLoS Comput Biol. 2024 Aug 8;20(8):e1012345. doi:
10.1371/journal.pcbi.1012345. Online ahead of print.

> Further, many data-driven approaches consist of abstract internal
> representations that may have no obvious connection to the
> underlying dynamics and control, or, require extensive model
> design and training. Here, we remove these constraints by
> demonstrating model pr …
> In order to understand how spatial characteristics like population
> mobility and clustering interplay with epidemic outbreaks, we
> formulate a stochastic-statistical environment-epidemic dynamic
> system (SEEDS) via an agent-based biased random walk model on a tw
> …
3. **Extensive loss of forage diversity in social bees owing to flower
constancy in simulated environments.**
3. **Simulation studies of social systems: telling the story based on
provenance patterns.**

Grüter C, Segers FHID, Hayes L.
Wilsdorf P, Reinhardt O, Prike T, Hinsch M, Bijak J, Uhrmacher AM.

Proc Biol Sci. 2024 Jul;291(2027):20241036. doi:
10.1098/rspb.2024.1036. Epub 2024 Jul 31.
R Soc Open Sci. 2024 Aug 7;11(8):240258. doi: 10.1098/rsos.240258.
eCollection 2024 Aug.

4. **Attraction by pairwise coherence explains the emergence of
ideological sorting.**
> In this paper, we refine the provenance pattern-based approach to
> address specific challenges of social agent-based simulation
> studies. Specifically, we focus on the activities and entities
> involved in collecting and analysing primary data about human
> decisions, and …
Zimmerman F, Pedraza L, Navajas J, Balenzuela P.
4. **Semiparametric inference of effective reproduction number dynamics
from wastewater pathogen surveillance data.**

PNAS Nexus. 2024 Jul 8;3(7):pgae263. doi: 10.1093/pnasnexus/pgae263.
eCollection 2024 Jul.
Goldstein IH, Parker DM, Jiang S, Minin VM.

> We numerically integrated the model’s master equations that
> perfectly describe the system’s dynamics and found that
> ideological sorting only emerges in models that include
> pairwise-coherence favoritism. We then compared the model’s
> outcomes with …
Biometrics. 2024 Jul 1;80(3):ujae074. doi: 10.1093/biomtc/ujae074.

5. **Predicting bacterial interaction outcomes from monoculture growth
and supernatant assays.**
> As a byproduct of our primary goal, we also produce a new model
> for estimating the effective reproduction number from case data
> using the same framework. We test this modeling framework in an
> agent-based simulation study with a realistic data generatin …
Schmitz DA, Wechsler T, Mignot I, Kümmerli R.
5. **Effects of Intervention Timing on Health-Related Fake News:
Simulation Study.**

ISME Commun. 2024 Mar 27;4(1):ycae045. doi: 10.1093/ismeco/ycae045.
eCollection 2024 Jan.
Gwon N, Jeong W, Kim JH, Oh KH, Jun JK.

6. **An agent-based model for collaborative learning to combat
antimicrobial resistance: proof of concept based on broiler
production in Senegal.**
JMIR Form Res. 2024 Aug 7;8:e48284. doi: 10.2196/48284.

Python Ndekou P, Drake A, Lomax J, Dione M, Faye A, Njiemessa
Nsangou MD, Korir L, Sklar E.
> METHODS: A simulation was conducted using the
> susceptible-infected-recovered (SIR) model, which is a
> representative model of the virus spread mechanism. …NetLogo, an
> agent-based model, was used as the analytical tool. RESULTS: Fake
> news lasted …
Sci One Health. 2023 Nov 4;2:100051. doi: 10.1016/j.soh.2023.100051.
eCollection 2023.
6. **Near-field hydrodynamic interactions determine travelling wave
directions of collectively beating cilia.**

> This paper reports on initial, proof-of-concept development of an
> agent-based model (ABM) as part of wider modelling efforts to
> support collaborations between groups interested in policy
> development for animal health and food systems. The model …
Cheng Z, Vilfan A, Wang Y, Golestanian R, Meng F.

7. **Deviation from the recommended schedule: optimal dosing interval
for a two-dose vaccination programme.**
J R Soc Interface. 2024 Aug;21(217):20240221. doi:
10.1098/rsif.2024.0221. Epub 2024 Aug 7.

Wang Z, Röst G, Moghadas SM.
> USA 118, e2102828118), we find that the first harmonic mode in the
> driving force acting on each individual cilium can determine the
> direction of the metachronal wave after considering the finite
> size of the beating trajectories, which is confirmed by our
> agent-based …
R Soc Open Sci. 2024 Jul 3;11(7):231971. doi: 10.1098/rsos.231971.
eCollection 2024 Jul.
7. **Emergence of collective behaviours from local Voronoi topological
perception.**

> Facing this challenge during the early stages of the COVID-19
> vaccine deployment, a pivotal policy question arose: whether to
> administer a single dose to a larger proportion of the population
> by deferring the second dose, or to prioritize stronger protection
> for a smaller subset …
Gonzalez I, Tisdell J, Choksi R, Nave JC.

8. **Derivation and simulation of a computational model of active cell
populations: How overlap avoidance, deformability, cell-cell
junctions and cytoskeletal forces affect alignment.**
R Soc Open Sci. 2024 Jun 5;11(6):231537. doi: 10.1098/rsos.231537.
eCollection 2024 Jun.

Leech V, Kenny FN, Marcotti S, Shaw TJ, Stramer BM, Manhart A.
> This article addresses how diverse collective behaviours arise
> from simple and realistic decisions made entirely at the level of
> each agent’s personal space in the sense of the Voronoi diagram.
> We present a discrete-time model in two dimensions in which
> individual agents a …
PLoS Comput Biol. 2024 Jul 29;20(7):e1011879. doi:
10.1371/journal.pcbi.1011879. Online ahead of print.
8. **Developing an Agent-Based Model that Predicts Listeria spp.
Transmission to Assess Listeria Control Strategies in Retail
Stores.**

> An important example are aligning fibroblasts in healthy or scar
> tissue. In this work we derive and simulate a mechanistic
> agent-based model of the collective behaviour of actively moving
> and interacting cells, with a focus on understanding collective
> alignme …
Jung Y, Qian C, Barnett-Neefs C, Ivanek R, Wiedmann M.

9. **Identifying Importation and Asymptomatic Spreaders of Multi-drug
Resistant Organisms in Hospital Settings.**
J Food Prot. 2024 Jul 31:100337. doi: 10.1016/j.jfp.2024.100337.
Online ahead of print.

Cui J, Heavey J, Klein E, Madden GR, Vullikanti A, Prakash BA.
> However, limited tools are available for retailers to assess
> practices that can enhance control of Listeria transmission to
> fresh produce. Therefore, we developed an agent-based model that
> can simulate Listeria transmission in retail produce sections to
> optim …
medRxiv \[Preprint\]. 2024 Jul 15:2024.07.14.24310393. doi:
10.1101/2024.07.14.24310393.
9. **Control of complex systems with generalized embedding and
empirical dynamic modeling.**

> In this work, we propose NEURABM, a new framework which integrates
> both neural networks and agent-based models (ABM) to combine the
> advantages of both modeling-based and machine learning-based
> methods. NEURABM simultaneously learns a neural network …
Park J, Sugihara G, Pao G.

10. **An agent-based method to estimate 3D cell migration trajectories
from 2D measurements: Quantifying and comparing T vs CAR-T 3D cell
migration.**
PLoS One. 2024 Aug 1;19(8):e0305408. doi:
10.1371/journal.pone.0305408. eCollection 2024.

Camacho-Gomez D, Movilla N, Borau C, Martin A, Oñate Salafranca C,
Pardo J, Gomez-Benito MJ, Garcia-Aznar JM.
> Further, many data-driven approaches consist of abstract internal
> representations that may have no obvious connection to the
> underlying dynamics and control, or, require extensive model
> design and training. Here, we remove these constraints by
> demonstrating model pr …
Comput Methods Programs Biomed. 2024 Jul 19;255:108331. doi:
10.1016/j.cmpb.2024.108331. Online ahead of print.
10. **Extensive loss of forage diversity in social bees owing to flower
constancy in simulated environments.**

Grüter C, Segers FHID, Hayes L.

> Quantifying three-dimensional (3D) cell migration requires
> microscopy techniques that may not be readily accessible. Thus, we
> introduce a straightforward mathematical model designed to infer
> 3D trajectories of cells from two-dimensional (2D) cell
> trajectories. METHODS: We …
Proc Biol Sci. 2024 Jul;291(2027):20241036. doi:
10.1098/rspb.2024.1036. Epub 2024 Jul 31.

## Code of Conduct

Expand Down

0 comments on commit 8dce77a

Please sign in to comment.