diff --git a/README.md b/README.md
index d9fb1ff..11f13cf 100644
--- a/README.md
+++ b/README.md
@@ -9,143 +9,144 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last
-update was on 2024-08-04 00:44:06.
+update was on 2024-08-11 00:44:58.
-1. **Developing an Agent-Based Model that Predicts Listeria spp.
- Transmission to Assess Listeria Control Strategies in Retail
- Stores.**
+1. **Modeling the population health impact of accurate and inaccurate
+ perceptions of harm from nicotine.**
- Jung Y, Qian C, Barnett-Neefs C, Ivanek R, Wiedmann M.
+ Hannel T, Wei L, Muhammad-Kah RS, Largo EG, Sarkar M.
- J Food Prot. 2024 Jul 31:100337. doi: 10.1016/j.jfp.2024.100337.
- Online ahead of print.
+ Harm Reduct J. 2024 Aug 9;21(1):145. doi:
+ 10.1186/s12954-024-01059-x.
- > However, limited tools are available for retailers to assess
- > practices that can enhance control of Listeria transmission to
- > fresh produce. Therefore, we developed an agent-based model that
- > can simulate Listeria transmission in retail produce sections to
- > optim …
+ > We assessed the population health impact associated with nicotine
+ > perceptions. METHODS: Using a previously validated agent-based
+ > model to the U.S. population, we analyzed nationally
+ > representative data from the Population Assessment of Tobacco and
+ > Health (PAT …
-2. **Control of complex systems with generalized embedding and
- empirical dynamic modeling.**
+2. **Interacting particle models on the impact of spatially
+ heterogeneous human behavioral factors on dynamics of infectious
+ diseases.**
- Park J, Sugihara G, Pao G.
+ Xiong Y, Wang C, Zhang Y.
- PLoS One. 2024 Aug 1;19(8):e0305408. doi:
- 10.1371/journal.pone.0305408. eCollection 2024.
+ PLoS Comput Biol. 2024 Aug 8;20(8):e1012345. doi:
+ 10.1371/journal.pcbi.1012345. Online ahead of print.
- > Further, many data-driven approaches consist of abstract internal
- > representations that may have no obvious connection to the
- > underlying dynamics and control, or, require extensive model
- > design and training. Here, we remove these constraints by
- > demonstrating model pr …
+ > In order to understand how spatial characteristics like population
+ > mobility and clustering interplay with epidemic outbreaks, we
+ > formulate a stochastic-statistical environment-epidemic dynamic
+ > system (SEEDS) via an agent-based biased random walk model on a tw
+ > …
-3. **Extensive loss of forage diversity in social bees owing to flower
- constancy in simulated environments.**
+3. **Simulation studies of social systems: telling the story based on
+ provenance patterns.**
- Grüter C, Segers FHID, Hayes L.
+ Wilsdorf P, Reinhardt O, Prike T, Hinsch M, Bijak J, Uhrmacher AM.
- Proc Biol Sci. 2024 Jul;291(2027):20241036. doi:
- 10.1098/rspb.2024.1036. Epub 2024 Jul 31.
+ R Soc Open Sci. 2024 Aug 7;11(8):240258. doi: 10.1098/rsos.240258.
+ eCollection 2024 Aug.
-4. **Attraction by pairwise coherence explains the emergence of
- ideological sorting.**
+ > In this paper, we refine the provenance pattern-based approach to
+ > address specific challenges of social agent-based simulation
+ > studies. Specifically, we focus on the activities and entities
+ > involved in collecting and analysing primary data about human
+ > decisions, and …
- Zimmerman F, Pedraza L, Navajas J, Balenzuela P.
+4. **Semiparametric inference of effective reproduction number dynamics
+ from wastewater pathogen surveillance data.**
- PNAS Nexus. 2024 Jul 8;3(7):pgae263. doi: 10.1093/pnasnexus/pgae263.
- eCollection 2024 Jul.
+ Goldstein IH, Parker DM, Jiang S, Minin VM.
- > We numerically integrated the model’s master equations that
- > perfectly describe the system’s dynamics and found that
- > ideological sorting only emerges in models that include
- > pairwise-coherence favoritism. We then compared the model’s
- > outcomes with …
+ Biometrics. 2024 Jul 1;80(3):ujae074. doi: 10.1093/biomtc/ujae074.
-5. **Predicting bacterial interaction outcomes from monoculture growth
- and supernatant assays.**
+ > As a byproduct of our primary goal, we also produce a new model
+ > for estimating the effective reproduction number from case data
+ > using the same framework. We test this modeling framework in an
+ > agent-based simulation study with a realistic data generatin …
- Schmitz DA, Wechsler T, Mignot I, Kümmerli R.
+5. **Effects of Intervention Timing on Health-Related Fake News:
+ Simulation Study.**
- ISME Commun. 2024 Mar 27;4(1):ycae045. doi: 10.1093/ismeco/ycae045.
- eCollection 2024 Jan.
+ Gwon N, Jeong W, Kim JH, Oh KH, Jun JK.
-6. **An agent-based model for collaborative learning to combat
- antimicrobial resistance: proof of concept based on broiler
- production in Senegal.**
+ JMIR Form Res. 2024 Aug 7;8:e48284. doi: 10.2196/48284.
- Python Ndekou P, Drake A, Lomax J, Dione M, Faye A, Njiemessa
- Nsangou MD, Korir L, Sklar E.
+ > METHODS: A simulation was conducted using the
+ > susceptible-infected-recovered (SIR) model, which is a
+ > representative model of the virus spread mechanism. …NetLogo, an
+ > agent-based model, was used as the analytical tool. RESULTS: Fake
+ > news lasted …
- Sci One Health. 2023 Nov 4;2:100051. doi: 10.1016/j.soh.2023.100051.
- eCollection 2023.
+6. **Near-field hydrodynamic interactions determine travelling wave
+ directions of collectively beating cilia.**
- > This paper reports on initial, proof-of-concept development of an
- > agent-based model (ABM) as part of wider modelling efforts to
- > support collaborations between groups interested in policy
- > development for animal health and food systems. The model …
+ Cheng Z, Vilfan A, Wang Y, Golestanian R, Meng F.
-7. **Deviation from the recommended schedule: optimal dosing interval
- for a two-dose vaccination programme.**
+ J R Soc Interface. 2024 Aug;21(217):20240221. doi:
+ 10.1098/rsif.2024.0221. Epub 2024 Aug 7.
- Wang Z, Röst G, Moghadas SM.
+ > USA 118, e2102828118), we find that the first harmonic mode in the
+ > driving force acting on each individual cilium can determine the
+ > direction of the metachronal wave after considering the finite
+ > size of the beating trajectories, which is confirmed by our
+ > agent-based …
- R Soc Open Sci. 2024 Jul 3;11(7):231971. doi: 10.1098/rsos.231971.
- eCollection 2024 Jul.
+7. **Emergence of collective behaviours from local Voronoi topological
+ perception.**
- > Facing this challenge during the early stages of the COVID-19
- > vaccine deployment, a pivotal policy question arose: whether to
- > administer a single dose to a larger proportion of the population
- > by deferring the second dose, or to prioritize stronger protection
- > for a smaller subset …
+ Gonzalez I, Tisdell J, Choksi R, Nave JC.
-8. **Derivation and simulation of a computational model of active cell
- populations: How overlap avoidance, deformability, cell-cell
- junctions and cytoskeletal forces affect alignment.**
+ R Soc Open Sci. 2024 Jun 5;11(6):231537. doi: 10.1098/rsos.231537.
+ eCollection 2024 Jun.
- Leech V, Kenny FN, Marcotti S, Shaw TJ, Stramer BM, Manhart A.
+ > This article addresses how diverse collective behaviours arise
+ > from simple and realistic decisions made entirely at the level of
+ > each agent’s personal space in the sense of the Voronoi diagram.
+ > We present a discrete-time model in two dimensions in which
+ > individual agents a …
- PLoS Comput Biol. 2024 Jul 29;20(7):e1011879. doi:
- 10.1371/journal.pcbi.1011879. Online ahead of print.
+8. **Developing an Agent-Based Model that Predicts Listeria spp.
+ Transmission to Assess Listeria Control Strategies in Retail
+ Stores.**
- > An important example are aligning fibroblasts in healthy or scar
- > tissue. In this work we derive and simulate a mechanistic
- > agent-based model of the collective behaviour of actively moving
- > and interacting cells, with a focus on understanding collective
- > alignme …
+ Jung Y, Qian C, Barnett-Neefs C, Ivanek R, Wiedmann M.
-9. **Identifying Importation and Asymptomatic Spreaders of Multi-drug
- Resistant Organisms in Hospital Settings.**
+ J Food Prot. 2024 Jul 31:100337. doi: 10.1016/j.jfp.2024.100337.
+ Online ahead of print.
- Cui J, Heavey J, Klein E, Madden GR, Vullikanti A, Prakash BA.
+ > However, limited tools are available for retailers to assess
+ > practices that can enhance control of Listeria transmission to
+ > fresh produce. Therefore, we developed an agent-based model that
+ > can simulate Listeria transmission in retail produce sections to
+ > optim …
- medRxiv \[Preprint\]. 2024 Jul 15:2024.07.14.24310393. doi:
- 10.1101/2024.07.14.24310393.
+9. **Control of complex systems with generalized embedding and
+ empirical dynamic modeling.**
- > In this work, we propose NEURABM, a new framework which integrates
- > both neural networks and agent-based models (ABM) to combine the
- > advantages of both modeling-based and machine learning-based
- > methods. NEURABM simultaneously learns a neural network …
+ Park J, Sugihara G, Pao G.
-10. **An agent-based method to estimate 3D cell migration trajectories
- from 2D measurements: Quantifying and comparing T vs CAR-T 3D cell
- migration.**
+ PLoS One. 2024 Aug 1;19(8):e0305408. doi:
+ 10.1371/journal.pone.0305408. eCollection 2024.
- Camacho-Gomez D, Movilla N, Borau C, Martin A, Oñate Salafranca C,
- Pardo J, Gomez-Benito MJ, Garcia-Aznar JM.
+ > Further, many data-driven approaches consist of abstract internal
+ > representations that may have no obvious connection to the
+ > underlying dynamics and control, or, require extensive model
+ > design and training. Here, we remove these constraints by
+ > demonstrating model pr …
- Comput Methods Programs Biomed. 2024 Jul 19;255:108331. doi:
- 10.1016/j.cmpb.2024.108331. Online ahead of print.
+10. **Extensive loss of forage diversity in social bees owing to flower
+ constancy in simulated environments.**
+
+ Grüter C, Segers FHID, Hayes L.
- > Quantifying three-dimensional (3D) cell migration requires
- > microscopy techniques that may not be readily accessible. Thus, we
- > introduce a straightforward mathematical model designed to infer
- > 3D trajectories of cells from two-dimensional (2D) cell
- > trajectories. METHODS: We …
+ Proc Biol Sci. 2024 Jul;291(2027):20241036. doi:
+ 10.1098/rspb.2024.1036. Epub 2024 Jul 31.
## Code of Conduct