From 95afb04e927067fc7ec69b8524ce1570f07fc3e8 Mon Sep 17 00:00:00 2001 From: gvegayon Date: Sun, 20 Aug 2023 00:34:17 +0000 Subject: [PATCH] Commit from GitHub Actions (Build it) --- README.md | 204 +++++++++++++++++++++++++++--------------------------- 1 file changed, 102 insertions(+), 102 deletions(-) diff --git a/README.md b/README.md index 8e8397d..80c7891 100644 --- a/README.md +++ b/README.md @@ -9,152 +9,152 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2023-08-13 00:34:05. +update was on 2023-08-20 00:34:15.
-1. **Understanding the Impact of Social Networks on the Spread of - Obesity.** +1. **Are all underimmunized measles clusters equally critical?** - Tuson M, Harper P, Gartner D, Behrens D. + Afroj Moon S, Marathe A, Vullikanti A. - Int J Environ Res Public Health. 2023 Jul 26;20(15):6451. doi: - 10.3390/ijerph20156451. + R Soc Open Sci. 2023 Aug 16;10(8):230873. doi: 10.1098/rsos.230873. + eCollection 2023 Aug. - > To achieve this, we develop a generalisable hybrid simulation and - > optimisation approach aimed at gaining qualitative and - > quantitative insights into the effect of social networks on the - > spread of obesity. Our simulation model has two components. - > Firstly, an agent- … + > This research develops a novel system science approach to examine + > the potential risk of outbreaks caused by geographical clustering + > of underimmunized individuals for an infectious disease like + > measles. We use an activity-based population network model and + > school imm … -2. **A Predictive Decision Analytics Approach for Primary Care - Operations Management: A Case Study of Double-Booking Strategy - Design and Evaluation.** +2. **Human group size puzzle: why it is odd that we live in large + societies.** - Zhou Y, Viswanatha A, Abdul Motaleb A, Lamichhane P, Chen KY, Young - R, Gurses AP, Xiao Y; PROMIS Investigators. + David-Barrett T. - Comput Ind Eng. 2023 Mar;17:109069. doi: 10.1016/j.cie.2023.109069. - Epub 2023 Feb 18. + R Soc Open Sci. 2023 Aug 16;10(8):230559. doi: 10.1098/rsos.230559. + eCollection 2023 Aug. - > A case study was conducted in a local family medicine clinic to - > demonstrate the use of this approach for patient no-show - > management. In this case study, a patient no-show prediction model - > was used in conjunction with an integrated agent-based and - > discrete-eve … + > When ecological factors do not limit primate group size, the + > problem of coordination creates an upper threshold even when + > cooperation is guaranteed. This paper offers a model of group + > coordination towards behavioural synchrony to spell out the + > mechanics of group size limit … -3. **Natural Antibacterial Agent-based Nanoparticles for Effective - Treatment of Intracellular MRSA Infection.** +3. **Investigating the effect of drug release on in-stent restenosis: A + hybrid continuum - agent-based modelling approach.** - Zou X, Cai S, Wang T, Zheng S, Cui X, Hao J, Chen X, Liu Y, Zhang Z, - Li Y. + Corti A, McQueen A, Migliavacca F, Chiastra C, McGinty S. - Acta Biomater. 2023 Aug 7:S1742-7061(23)00457-9. doi: - 10.1016/j.actbio.2023.08.004. Online ahead of print. + Comput Methods Programs Biomed. 2023 Aug 1;241:107739. doi: + 10.1016/j.cmpb.2023.107739. Online ahead of print. - > Using a specific combination of the natural antibacterial agents - > CA and GLA, NPs effectively eradicated intracellular MRSA with low - > toxicity to normal tissues in a MRSA-induced peritonitis model. - > This strategy presents a potential alternative for enhancing - > intracellular MR … + > However, the integration of sophisticated drug models with an + > agent-based model (ABM) of ISR has been under-investigated. The + > aim of the present study was to develop a novel multiscale + > agent-based modelling framework of ISR followi … -4. **Exploring the Onset and Progression of Prostate Cancer through a - Multicellular Agent-based Model.** +4. **The form of uncertainty affects selection for social learning.** - Passier M, van Genderen MNG, Zaalberg A, Kneppers J, Bekers EM, - Bergman AM, Zwart W, Eduati F. + Turner MA, Moya C, Smaldino PE, Jones JH. - Cancer Res Commun. 2023 Aug 7;3(8):1473-1485. doi: - 10.1158/2767-9764.CRC-23-0097. eCollection 2023 Aug. + Evol Hum Sci. 2023 May 22;5:e20. doi: 10.1017/ehs.2023.11. + eCollection 2023. - > To expand our knowledge and explore means to prevent and treat the - > disease, it is important to understand what drives the onset and - > early stages of prostate cancer. In this study, we developed an - > agent-based model of a prostatic acinus including its microenvi … + > When these combine, it is nearly impossible to fully learn about + > the environment. We develop an evolutionary agent-based model to + > test how each form of uncertainty affects the evolution of social + > learning. Agents perform one of several behaviours, modelled … -5. **Recombination as an enforcement mechanism of prosocial behavior in - cooperating bacteria.** +5. **Statistical signals of copying are robust to time- and + space-averaging.** - Lee IPA, Eldakar OT, Gogarten JP, Andam CP. + Youngblood M, Miton H, Morin O. - iScience. 2023 Jul 13;26(8):107344. doi: 10.1016/j.isci.2023.107344. - eCollection 2023 Aug 18. + Evol Hum Sci. 2023 Apr 13;5:e10. doi: 10.1017/ehs.2023.5. + eCollection 2023. - > We propose that homologous recombination provides such a mechanism - > in bacteria. Using an agent-based model of recombination in - > bacteria playing a public goods game, we demonstrate how changes - > in recombination rates affect the proportion of cooperating cells. - > … + > In this preregistered study, we used a dataset of \~81,000 Kansas + > cattle brands (1990-2016) to explore two aspects: (1) the relative + > influence of copying, pressure for distinctiveness and pressure + > for complexity on the creation and diffusion of brand components; + > and (2) the effect … -6. **Modelling the impact of a high-uptake bivalent booster scenario on - the COVID-19 burden and healthcare costs in New York City.** +6. **Role of masks in mitigating viral spread on networks.** - Pandey A, Fitzpatrick MC, Moghadas SM, Vilches TN, Ko C, Vasan A, - Galvani AP. + Tian Y, Sridhar A, Wu CW, Levin SA, Carley KM, Poor HV, Yağan O. - Lancet Reg Health Am. 2023 Jul 27;24:100555. doi: - 10.1016/j.lana.2023.100555. eCollection 2023 Aug. + Phys Rev E. 2023 Jul;108(1-1):014306. doi: + 10.1103/PhysRevE.108.014306. - > Assessing the impact of improved population-level booster coverage - > with bivalent vaccines in NYC can help inform investment towards - > vaccination and potential cost-savings. METHODS: We calibrated an - > agent-based model of disease transmission to confirmed and pr … + > In this work, we provide a comprehensive quantitative analysis of + > the impact of mask-wearing. To this end, we propose a novel + > agent-based model of viral spread on networks where agents may + > either wear no mask or wear one of several types of masks with + > differe … -7. **Impact of school operating scenarios on COVID-19 transmission - under vaccination in the U.S.: an agent-based simulation model.** +7. **Systems Thinking and Complexity Science Methods and the Policy + Process in Non-communicable Disease Prevention: A Systematic Scoping + Review.** - Weng X, Chen Q, Sathapathi TK, Yin X, Wang L. + Astbury CC, Lee KM, McGill E, Clarke J, Egan M, Halloran A, Malykh + R, Rippin H, Wickramasinghe K, Penney TL. - Sci Rep. 2023 Aug 8;13(1):12836. doi: 10.1038/s41598-023-37980-7. + Int J Health Policy Manag. 2023;12:6772. doi: + 10.34172/ijhpm.2023.6772. Epub 2023 Feb 26. - > However, little is known about the impact of different school - > operating scenarios considering the ongoing efforts of - > vaccination. In this study, we deployed an agent-based simulation - > model to mimic disease transmission in a mid-sized community - > consisting of 1 … + > The most common policy areas were tobacco control, obesity + > prevention and physical activity promotion. Methods applied + > included system dynamics modelling, agent-based modelling and + > concept mapping. Advantages included supporting evidence-informed + > decis … -8. **Epidemic dynamics with time-varying transmission risk reveal the - role of disease stage-dependent infectiousness.** +8. **Model Choice for Quantitative Health Impact Assessment and + Modelling: An Expert Consultation and Narrative Literature Review.** - Li A, Wu J, Moghadas SM. + Mueller N, Anderle R, Brachowicz N, Graziadei H, Lloyd SJ, de + Sampaio Morais G, Sironi AP, Gibert K, Tonne C, Nieuwenhuijsen M, + Rasella D. - J Theor Biol. 2023 Aug 5:111594. doi: 10.1016/j.jtbi.2023.111594. - Online ahead of print. + Int J Health Policy Manag. 2023;12:7103. doi: + 10.34172/ijhpm.2023.7103. Epub 2023 Mar 13. - > Despite the evidence of time-varying transmission risk, most - > dynamic models of epidemics assume a constant transmission rate - > during the infectious period. Recent work has shown the difference - > in epidemic dynamics when this assumption is relaxed and different - > transmission r … + > We reviewed relevant models, so as to provide public health + > researchers with considerations for HIA model choice. …RESULTS: + > Seven relevant models for health impacts forecasting were + > identified, consisting of (i) comparative risk assessment + > (CRA), (ii) time … -9. **Complexity in the dengue spreading: A network analysis approach.** +9. **In-silico and in-vitro morphometric analysis of intestinal + organoids.** - Lima LL, Atman APF. + Montes-Olivas S, Legge D, Lund A, Fletcher AG, Williams AC, Marucci + L, Homer M. - PLoS One. 2023 Aug 7;18(8):e0289690. doi: - 10.1371/journal.pone.0289690. eCollection 2023. + PLoS Comput Biol. 2023 Aug 14;19(8):e1011386. doi: + 10.1371/journal.pcbi.1011386. Online ahead of print. - > In this scenario, innovative approaches are essential to help - > public agents in the fight against the disease. Using an - > agent-based model, we investigated the network morphology of a - > dengue endemic region considering four different serotypes and a - > small popula … + > Organoids offer a powerful model to study cellular + > self-organisation, the growth of specific tissue morphologies + > in-vitro, and to assess potential medical therapies. …In addition, + > we modified an existing two-dimensional agent-based mathematical + > model … -10. **Efficient simulation of neural development using shared memory - parallelization.** +10. **A multiscale orchestrated computational framework to reveal + emergent phenomena in neuroblastoma.** - De Schutter E. + Borau C, Wertheim KY, Hervas-Raluy S, Sainz-DeMena D, Walker D, + Chisholm R, Richmond P, Varella V, Viceconti M, Montero A, + Gregori-Puigjané E, Mestres J, Kasztelnik M, García-Aznar JM. - Front Neuroinform. 2023 Jul 20;17:1212384. doi: - 10.3389/fninf.2023.1212384. eCollection 2023. + Comput Methods Programs Biomed. 2023 Aug 1;241:107742. doi: + 10.1016/j.cmpb.2023.107742. Online ahead of print. - > The Neural Development Simulator, NeuroDevSim, is a Python module - > that simulates the most important aspects of brain development: - > morphological growth, migration, and pruning. It uses an - > agent-based modeling approach inherited from the NeuroMaC - > software. …A … + > While continuum cancer models capture the overall behaviour of + > tumours, and agent-based models represent the complex behaviour of + > individual cells, multiscale models represent interactions at + > different organisational levels, providing a more com … ## Code of Conduct