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It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2024-11-03 00:51:43.
update was on 2024-11-10 00:50:00.

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</div>

1. **Bacterial community dynamics as a result of growth-yield trade-off
and multispecies metabolic interactions toward understanding the gut
biofilm niche.**
1. **Towards verifiable cancer digital twins: tissue level modeling
protocol for precision medicine.**

Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK.
Kemkar S, Tao M, Ghosh A, Stamatakos G, Graf N, Poorey K,
Balakrishnan U, Trask N, Radhakrishnan R.

BMC Microbiol. 2024 Oct 29;24(1):441. doi:
10.1186/s12866-024-03566-0.
Front Physiol. 2024 Oct 23;15:1473125. doi:
10.3389/fphys.2024.1473125. eCollection 2024.

> One example is gut mucosal communities, where dense, closely
> packed communities develop under the concurrent influence of
> nutrient transport from the lumen and fluid-mediated detachment of
> bacteria. In this study, we model a mucosal niche through a
> coupled agent- …
> Nevertheless, the complexity of the data gathered from these
> methods cannot be fully interpreted through multimodal data
> analysis alone. Mathematical modeling plays a crucial role in
> delineating the underlying mechanisms to explain sources of
> heterogeneity using patient-sp …
2. **Investigating immersion and migration decisions for agent-based
modelling: A cautionary tale.**
2. **Combining sterile insect releases with refuge areas to delay the
evolution of resistance to Bt sugarcane: an agent-based modeling
approach.**

Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse
S.
Potgieter L, Human DJ, Downing S.

Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3.
eCollection 2023.
J Econ Entomol. 2024 Nov 6:toae248. doi: 10.1093/jee/toae248. Online
ahead of print.

> BACKGROUND: Agent-based modelling provides an appealing
> methodological choice for simulating human behaviour and
> decisions. …Our results act as a cautionary tale for agent-based
> modellers, highlighting that the modelling needs sh …
> A lesser-known method to control against resistance development is
> sterile insect releases. In this article, an agent-based
> simulation model is used to test the effectiveness of combining
> the use of Bt sugarcane, refuge areas, and sterile insect releases
> as a …
3. **Coevolution of norm psychology and cooperation through exapted
conformity.**
3. **Quadrivalent Conjugate Vaccine and Invasive Meningococcal Disease
in US Adolescents and Young Adults.**

Kido Y, Takezawa M.
Shin T, Wells CR, Shoukat A, Potter-Schwartz L, Langevin E, Langley
JM, Galvani AP, Moghadas SM.

Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37.
eCollection 2024.
JAMA Netw Open. 2024 Nov 4;7(11):e2443551. doi:
10.1001/jamanetworkopen.2024.43551.

> This study theoretically explores the socialisation of humans
> under these norms. Our agent-based model simulates scenarios where
> diverse agents with heterogeneous norm psychologies engage in
> collective action to maximise their utility functions that capture
> t …
> The model included the entire age-stratified US population and was
> fitted to national incidence data for serogroups C, W, and Y from
> January 1, 2001, to December 31, 2021, with stratification by
> vaccination status for IMD cases. …CONCLUSIONS AND RELEVANCE: This
> decision …
4. **AMBER: A Modular Model for Tumor Growth, Vasculature and Radiation
Response.**
4. **Routine immunization against Streptococcus pneumoniae and
Haemophilus influenzae type B and antibiotic consumption in India: a
dynamic modeling analysis.**

Kunz LV, Bosque JJ, Nikmaneshi M, Chamseddine I, Munn LL, Schuemann
J, Paganetti H, Bertolet A.
Kumar CK, Gleason AC, Parameswaran GG, Summan A, Klein E,
Laxminarayan R, Nandi A.

Bull Math Biol. 2024 Oct 26;86(12):139. doi:
10.1007/s11538-024-01371-4.
Lancet Reg Health Southeast Asia. 2024 Oct 16;31:100498. doi:
10.1016/j.lansea.2024.100498. eCollection 2024 Dec.

> In particular, agent-based models (ABMs) tracking individual
> agents and their interactions are useful for their flexibility and
> ability to model complex behaviors. …Additionally, the integration
> into tumor ABMs of precise radiation dose calculations …
> We retrospectively estimated the population-level reductions in
> antibiotic use in India following the introduction of vaccines
> against Streptococcus pneumoniae and Haemophilius influenzae type
> B in the national immunization program for children in the
> mid-2010s and projected futu …
5. **Do COVID-19 Infectious Disease Models Incorporate the Social
Determinants of Health? A Systematic Review.**
5. **Mathematical frameworks for the analysis of norms.**

John-Baptiste AA, Moulin M, Li Z, Hamilton D, Crichlow G, Klein DE,
Alemu FW, Ghattas L, McDonald K, Asaria M, Sharpe C, Pandya E,
Moqueet N, Champredon D, Moghadas SM, Cooper LA, Pinto A, Stranges
S, Haworth-Brockman MJ, Galvani A, Ali S.
Sontuoso A.

Public Health Rev. 2024 Oct 10;45:1607057. doi:
10.3389/phrs.2024.1607057. eCollection 2024.
Curr Opin Psychol. 2024 Oct 16;60:101930. doi:
10.1016/j.copsyc.2024.101930. Online ahead of print.

> Most pertained to multiple countries (n = 15), the United States
> (n = 12), or China (n = 7). Most models were compartmental (n
> = 45) and agent-based (n = 7). Age was the most incorporated SDH
> (n = 74), followed by gender (n = 15), race/ethnicity (n = 7) and
> r …
> Research into society’s informal rules of conduct, or norms, has
> recently experienced a surge, extending across multiple academic
> disciplines. Despite this growth, the theoretical modeling of
> norms often remains siloed within specific paradigms, as different
> disciplines te …
6. **PhysiMeSS - a new physiCell addon for extracellular matrix
modelling.**
6. **CFD investigations of a shape-memory polymer foam-based
endovascular embolization device for the treatment of intracranial
aneurysms.**

Noël V, Ruscone M, Shuttleworth R, Macnamara CK.
Cabaniss T, Bodlak R, Liu Y, Colby G, Lee H, Bohnstedt B, Garziera
R, Holzapfel G, Lee CH.

GigaByte. 2024 Oct 16;2024:gigabyte136. doi: 10.46471/gigabyte.136.
eCollection 2024.
Res Sq \[Preprint\]. 2024 Oct 18:rs.3.rs-5014601. doi:
10.21203/rs.3.rs-5014601/v1.

> The extracellular matrix, composed of macromolecules like collagen
> fibres, provides structural support to cells and acts as a barrier
> that metastatic cells degrade to spread beyond the primary tumour.
> While agent-based frameworks, such as PhysiCell, can simulate the
> …
> The hemodynamic and convective heat transfer effects of a
> patient-specific endovascular therapeutic agent based on shape
> memory polymer foam (SMPf) are evaluated using computational fluid
> dynamics studies for six patient-specific aneurysm geometries. The
> SMPf device …
7. **Neutrophils under the microscope: neutrophil dynamics in
infection, inflammation, and cancer revealed using intravital
imaging.**
7. **Investigating immersion and migration decisions for agent-based
modelling: A cautionary tale.**

Yam AO, Jakovija A, Gatt C, Chtanova T.
Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse
S.

Front Immunol. 2024 Oct 8;15:1458035. doi:
10.3389/fimmu.2024.1458035. eCollection 2024.
Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3.
eCollection 2023.

> Finally, we highlight how computational modeling techniques,
> especially agent-based modeling, complement experimental data by
> elucidating neutrophil kinetics at the level of individual cells
> as well as their collective behavior. …
> BACKGROUND: Agent-based modelling provides an appealing
> methodological choice for simulating human behaviour and
> decisions. …Our results act as a cautionary tale for agent-based
> modellers, highlighting that the modelling needs sh …
8. **Gardens reduce seasonal hunger gaps for farmland pollinators.**
8. **LLMs and generative agent-based models for complex systems
research.**

Timberlake TP, Tew NE, Memmott J.
Lu Y, Aleta A, Du C, Shi L, Moreno Y.

Proc Biol Sci. 2024 Oct;291(2033):20241523. doi:
10.1098/rspb.2024.1523. Epub 2024 Oct 23.
Phys Life Rev. 2024 Oct 28;51:283-293. doi:
10.1016/j.plrev.2024.10.013. Online ahead of print.

> Consistent with this pattern, bumblebee activity increased in
> gardens relative to farmland during early spring and late summer.
> An agent-based model reinforces this point, showing that timing,
> not quantity, of garden nectar supply enhances bumblebee colony gr
> …
> In particular, Generative Agent-Based Models (GABMs), which
> integrate LLMs to simulate human behavior, have attracted
> increasing public attention due to their potential to model
> complex interactions in a wide range of artificial environments.
> This pape …
9. **Tuning collective actuation of active solids by optimizing
activity localization.**
9. **Bacterial community dynamics as a result of growth-yield trade-off
and multispecies metabolic interactions toward understanding the gut
biofilm niche.**

Lazzari D, Dauchot O, Brito C.
Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK.

Soft Matter. 2024 Oct 21. doi: 10.1039/d4sm00868e. Online ahead of
print.
BMC Microbiol. 2024 Oct 29;24(1):441. doi:
10.1186/s12866-024-03566-0.

> Here, we investigate numerically how localizing activity to a
> fraction of modes enables the selection of non-trivial collective
> actuation. We perform numerical simulations of an agent-based
> model on triangular and disordered lattices and vary the
> concentratio …
> One example is gut mucosal communities, where dense, closely
> packed communities develop under the concurrent influence of
> nutrient transport from the lumen and fluid-mediated detachment of
> bacteria. In this study, we model a mucosal niche through a
> coupled agent- …
10. **Enhancing Medical Training Through Learning From Mistakes by
Interacting With an Ill-Trained Reinforcement Learning Agent.**
10. **Coevolution of norm psychology and cooperation through exapted
conformity.**

Kakdas YC, Kockara S, Halic T, Demirel D.
Kido Y, Takezawa M.

IEEE Trans Learn Technol. 2024;17:1248-1260. doi:
10.1109/tlt.2024.3372508. Epub 2024 Mar 4.
Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37.
eCollection 2024.

> This allows students to experience many outlier cases they might
> not encounter in an in-class educational model. In the assessment
> mode, an IRL-based method is used to evaluate how effective the
> participant is at correcting the mistakes performed by the RL
> agent. …
> This study theoretically explores the socialisation of humans
> under these norms. Our agent-based model simulates scenarios where
> diverse agents with heterogeneous norm psychologies engage in
> collective action to maximise their utility functions that capture
> t …
## Code of Conduct

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