diff --git a/README.md b/README.md
index 396438e..7ac663e 100644
--- a/README.md
+++ b/README.md
@@ -9,154 +9,158 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last
-update was on 2024-11-03 00:51:43.
+update was on 2024-11-10 00:50:00.
-1. **Bacterial community dynamics as a result of growth-yield trade-off
- and multispecies metabolic interactions toward understanding the gut
- biofilm niche.**
+1. **Towards verifiable cancer digital twins: tissue level modeling
+ protocol for precision medicine.**
- Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK.
+ Kemkar S, Tao M, Ghosh A, Stamatakos G, Graf N, Poorey K,
+ Balakrishnan U, Trask N, Radhakrishnan R.
- BMC Microbiol. 2024 Oct 29;24(1):441. doi:
- 10.1186/s12866-024-03566-0.
+ Front Physiol. 2024 Oct 23;15:1473125. doi:
+ 10.3389/fphys.2024.1473125. eCollection 2024.
- > One example is gut mucosal communities, where dense, closely
- > packed communities develop under the concurrent influence of
- > nutrient transport from the lumen and fluid-mediated detachment of
- > bacteria. In this study, we model a mucosal niche through a
- > coupled agent- …
+ > Nevertheless, the complexity of the data gathered from these
+ > methods cannot be fully interpreted through multimodal data
+ > analysis alone. Mathematical modeling plays a crucial role in
+ > delineating the underlying mechanisms to explain sources of
+ > heterogeneity using patient-sp …
-2. **Investigating immersion and migration decisions for agent-based
- modelling: A cautionary tale.**
+2. **Combining sterile insect releases with refuge areas to delay the
+ evolution of resistance to Bt sugarcane: an agent-based modeling
+ approach.**
- Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse
- S.
+ Potgieter L, Human DJ, Downing S.
- Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3.
- eCollection 2023.
+ J Econ Entomol. 2024 Nov 6:toae248. doi: 10.1093/jee/toae248. Online
+ ahead of print.
- > BACKGROUND: Agent-based modelling provides an appealing
- > methodological choice for simulating human behaviour and
- > decisions. …Our results act as a cautionary tale for agent-based
- > modellers, highlighting that the modelling needs sh …
+ > A lesser-known method to control against resistance development is
+ > sterile insect releases. In this article, an agent-based
+ > simulation model is used to test the effectiveness of combining
+ > the use of Bt sugarcane, refuge areas, and sterile insect releases
+ > as a …
-3. **Coevolution of norm psychology and cooperation through exapted
- conformity.**
+3. **Quadrivalent Conjugate Vaccine and Invasive Meningococcal Disease
+ in US Adolescents and Young Adults.**
- Kido Y, Takezawa M.
+ Shin T, Wells CR, Shoukat A, Potter-Schwartz L, Langevin E, Langley
+ JM, Galvani AP, Moghadas SM.
- Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37.
- eCollection 2024.
+ JAMA Netw Open. 2024 Nov 4;7(11):e2443551. doi:
+ 10.1001/jamanetworkopen.2024.43551.
- > This study theoretically explores the socialisation of humans
- > under these norms. Our agent-based model simulates scenarios where
- > diverse agents with heterogeneous norm psychologies engage in
- > collective action to maximise their utility functions that capture
- > t …
+ > The model included the entire age-stratified US population and was
+ > fitted to national incidence data for serogroups C, W, and Y from
+ > January 1, 2001, to December 31, 2021, with stratification by
+ > vaccination status for IMD cases. …CONCLUSIONS AND RELEVANCE: This
+ > decision …
-4. **AMBER: A Modular Model for Tumor Growth, Vasculature and Radiation
- Response.**
+4. **Routine immunization against Streptococcus pneumoniae and
+ Haemophilus influenzae type B and antibiotic consumption in India: a
+ dynamic modeling analysis.**
- Kunz LV, Bosque JJ, Nikmaneshi M, Chamseddine I, Munn LL, Schuemann
- J, Paganetti H, Bertolet A.
+ Kumar CK, Gleason AC, Parameswaran GG, Summan A, Klein E,
+ Laxminarayan R, Nandi A.
- Bull Math Biol. 2024 Oct 26;86(12):139. doi:
- 10.1007/s11538-024-01371-4.
+ Lancet Reg Health Southeast Asia. 2024 Oct 16;31:100498. doi:
+ 10.1016/j.lansea.2024.100498. eCollection 2024 Dec.
- > In particular, agent-based models (ABMs) tracking individual
- > agents and their interactions are useful for their flexibility and
- > ability to model complex behaviors. …Additionally, the integration
- > into tumor ABMs of precise radiation dose calculations …
+ > We retrospectively estimated the population-level reductions in
+ > antibiotic use in India following the introduction of vaccines
+ > against Streptococcus pneumoniae and Haemophilius influenzae type
+ > B in the national immunization program for children in the
+ > mid-2010s and projected futu …
-5. **Do COVID-19 Infectious Disease Models Incorporate the Social
- Determinants of Health? A Systematic Review.**
+5. **Mathematical frameworks for the analysis of norms.**
- John-Baptiste AA, Moulin M, Li Z, Hamilton D, Crichlow G, Klein DE,
- Alemu FW, Ghattas L, McDonald K, Asaria M, Sharpe C, Pandya E,
- Moqueet N, Champredon D, Moghadas SM, Cooper LA, Pinto A, Stranges
- S, Haworth-Brockman MJ, Galvani A, Ali S.
+ Sontuoso A.
- Public Health Rev. 2024 Oct 10;45:1607057. doi:
- 10.3389/phrs.2024.1607057. eCollection 2024.
+ Curr Opin Psychol. 2024 Oct 16;60:101930. doi:
+ 10.1016/j.copsyc.2024.101930. Online ahead of print.
- > Most pertained to multiple countries (n = 15), the United States
- > (n = 12), or China (n = 7). Most models were compartmental (n
- > = 45) and agent-based (n = 7). Age was the most incorporated SDH
- > (n = 74), followed by gender (n = 15), race/ethnicity (n = 7) and
- > r …
+ > Research into society’s informal rules of conduct, or norms, has
+ > recently experienced a surge, extending across multiple academic
+ > disciplines. Despite this growth, the theoretical modeling of
+ > norms often remains siloed within specific paradigms, as different
+ > disciplines te …
-6. **PhysiMeSS - a new physiCell addon for extracellular matrix
- modelling.**
+6. **CFD investigations of a shape-memory polymer foam-based
+ endovascular embolization device for the treatment of intracranial
+ aneurysms.**
- Noël V, Ruscone M, Shuttleworth R, Macnamara CK.
+ Cabaniss T, Bodlak R, Liu Y, Colby G, Lee H, Bohnstedt B, Garziera
+ R, Holzapfel G, Lee CH.
- GigaByte. 2024 Oct 16;2024:gigabyte136. doi: 10.46471/gigabyte.136.
- eCollection 2024.
+ Res Sq \[Preprint\]. 2024 Oct 18:rs.3.rs-5014601. doi:
+ 10.21203/rs.3.rs-5014601/v1.
- > The extracellular matrix, composed of macromolecules like collagen
- > fibres, provides structural support to cells and acts as a barrier
- > that metastatic cells degrade to spread beyond the primary tumour.
- > While agent-based frameworks, such as PhysiCell, can simulate the
- > …
+ > The hemodynamic and convective heat transfer effects of a
+ > patient-specific endovascular therapeutic agent based on shape
+ > memory polymer foam (SMPf) are evaluated using computational fluid
+ > dynamics studies for six patient-specific aneurysm geometries. The
+ > SMPf device …
-7. **Neutrophils under the microscope: neutrophil dynamics in
- infection, inflammation, and cancer revealed using intravital
- imaging.**
+7. **Investigating immersion and migration decisions for agent-based
+ modelling: A cautionary tale.**
- Yam AO, Jakovija A, Gatt C, Chtanova T.
+ Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse
+ S.
- Front Immunol. 2024 Oct 8;15:1458035. doi:
- 10.3389/fimmu.2024.1458035. eCollection 2024.
+ Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3.
+ eCollection 2023.
- > Finally, we highlight how computational modeling techniques,
- > especially agent-based modeling, complement experimental data by
- > elucidating neutrophil kinetics at the level of individual cells
- > as well as their collective behavior. …
+ > BACKGROUND: Agent-based modelling provides an appealing
+ > methodological choice for simulating human behaviour and
+ > decisions. …Our results act as a cautionary tale for agent-based
+ > modellers, highlighting that the modelling needs sh …
-8. **Gardens reduce seasonal hunger gaps for farmland pollinators.**
+8. **LLMs and generative agent-based models for complex systems
+ research.**
- Timberlake TP, Tew NE, Memmott J.
+ Lu Y, Aleta A, Du C, Shi L, Moreno Y.
- Proc Biol Sci. 2024 Oct;291(2033):20241523. doi:
- 10.1098/rspb.2024.1523. Epub 2024 Oct 23.
+ Phys Life Rev. 2024 Oct 28;51:283-293. doi:
+ 10.1016/j.plrev.2024.10.013. Online ahead of print.
- > Consistent with this pattern, bumblebee activity increased in
- > gardens relative to farmland during early spring and late summer.
- > An agent-based model reinforces this point, showing that timing,
- > not quantity, of garden nectar supply enhances bumblebee colony gr
- > …
+ > In particular, Generative Agent-Based Models (GABMs), which
+ > integrate LLMs to simulate human behavior, have attracted
+ > increasing public attention due to their potential to model
+ > complex interactions in a wide range of artificial environments.
+ > This pape …
-9. **Tuning collective actuation of active solids by optimizing
- activity localization.**
+9. **Bacterial community dynamics as a result of growth-yield trade-off
+ and multispecies metabolic interactions toward understanding the gut
+ biofilm niche.**
- Lazzari D, Dauchot O, Brito C.
+ Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK.
- Soft Matter. 2024 Oct 21. doi: 10.1039/d4sm00868e. Online ahead of
- print.
+ BMC Microbiol. 2024 Oct 29;24(1):441. doi:
+ 10.1186/s12866-024-03566-0.
- > Here, we investigate numerically how localizing activity to a
- > fraction of modes enables the selection of non-trivial collective
- > actuation. We perform numerical simulations of an agent-based
- > model on triangular and disordered lattices and vary the
- > concentratio …
+ > One example is gut mucosal communities, where dense, closely
+ > packed communities develop under the concurrent influence of
+ > nutrient transport from the lumen and fluid-mediated detachment of
+ > bacteria. In this study, we model a mucosal niche through a
+ > coupled agent- …
-10. **Enhancing Medical Training Through Learning From Mistakes by
- Interacting With an Ill-Trained Reinforcement Learning Agent.**
+10. **Coevolution of norm psychology and cooperation through exapted
+ conformity.**
- Kakdas YC, Kockara S, Halic T, Demirel D.
+ Kido Y, Takezawa M.
- IEEE Trans Learn Technol. 2024;17:1248-1260. doi:
- 10.1109/tlt.2024.3372508. Epub 2024 Mar 4.
+ Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37.
+ eCollection 2024.
- > This allows students to experience many outlier cases they might
- > not encounter in an in-class educational model. In the assessment
- > mode, an IRL-based method is used to evaluate how effective the
- > participant is at correcting the mistakes performed by the RL
- > agent. …
+ > This study theoretically explores the socialisation of humans
+ > under these norms. Our agent-based model simulates scenarios where
+ > diverse agents with heterogeneous norm psychologies engage in
+ > collective action to maximise their utility functions that capture
+ > t …
## Code of Conduct