From 9b913d8b63086a37f4d828bd1c7f84e6e92ced4b Mon Sep 17 00:00:00 2001 From: gvegayon Date: Sun, 10 Nov 2024 00:50:03 +0000 Subject: [PATCH] Commit from GitHub Actions (Build it) --- README.md | 212 +++++++++++++++++++++++++++--------------------------- 1 file changed, 108 insertions(+), 104 deletions(-) diff --git a/README.md b/README.md index 396438e..7ac663e 100644 --- a/README.md +++ b/README.md @@ -9,154 +9,158 @@ document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last -update was on 2024-11-03 00:51:43. +update was on 2024-11-10 00:50:00.
-1. **Bacterial community dynamics as a result of growth-yield trade-off - and multispecies metabolic interactions toward understanding the gut - biofilm niche.** +1. **Towards verifiable cancer digital twins: tissue level modeling + protocol for precision medicine.** - Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK. + Kemkar S, Tao M, Ghosh A, Stamatakos G, Graf N, Poorey K, + Balakrishnan U, Trask N, Radhakrishnan R. - BMC Microbiol. 2024 Oct 29;24(1):441. doi: - 10.1186/s12866-024-03566-0. + Front Physiol. 2024 Oct 23;15:1473125. doi: + 10.3389/fphys.2024.1473125. eCollection 2024. - > One example is gut mucosal communities, where dense, closely - > packed communities develop under the concurrent influence of - > nutrient transport from the lumen and fluid-mediated detachment of - > bacteria. In this study, we model a mucosal niche through a - > coupled agent- … + > Nevertheless, the complexity of the data gathered from these + > methods cannot be fully interpreted through multimodal data + > analysis alone. Mathematical modeling plays a crucial role in + > delineating the underlying mechanisms to explain sources of + > heterogeneity using patient-sp … -2. **Investigating immersion and migration decisions for agent-based - modelling: A cautionary tale.** +2. **Combining sterile insect releases with refuge areas to delay the + evolution of resistance to Bt sugarcane: an agent-based modeling + approach.** - Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse - S. + Potgieter L, Human DJ, Downing S. - Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3. - eCollection 2023. + J Econ Entomol. 2024 Nov 6:toae248. doi: 10.1093/jee/toae248. Online + ahead of print. - > BACKGROUND: Agent-based modelling provides an appealing - > methodological choice for simulating human behaviour and - > decisions. …Our results act as a cautionary tale for agent-based - > modellers, highlighting that the modelling needs sh … + > A lesser-known method to control against resistance development is + > sterile insect releases. In this article, an agent-based + > simulation model is used to test the effectiveness of combining + > the use of Bt sugarcane, refuge areas, and sterile insect releases + > as a … -3. **Coevolution of norm psychology and cooperation through exapted - conformity.** +3. **Quadrivalent Conjugate Vaccine and Invasive Meningococcal Disease + in US Adolescents and Young Adults.** - Kido Y, Takezawa M. + Shin T, Wells CR, Shoukat A, Potter-Schwartz L, Langevin E, Langley + JM, Galvani AP, Moghadas SM. - Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37. - eCollection 2024. + JAMA Netw Open. 2024 Nov 4;7(11):e2443551. doi: + 10.1001/jamanetworkopen.2024.43551. - > This study theoretically explores the socialisation of humans - > under these norms. Our agent-based model simulates scenarios where - > diverse agents with heterogeneous norm psychologies engage in - > collective action to maximise their utility functions that capture - > t … + > The model included the entire age-stratified US population and was + > fitted to national incidence data for serogroups C, W, and Y from + > January 1, 2001, to December 31, 2021, with stratification by + > vaccination status for IMD cases. …CONCLUSIONS AND RELEVANCE: This + > decision … -4. **AMBER: A Modular Model for Tumor Growth, Vasculature and Radiation - Response.** +4. **Routine immunization against Streptococcus pneumoniae and + Haemophilus influenzae type B and antibiotic consumption in India: a + dynamic modeling analysis.** - Kunz LV, Bosque JJ, Nikmaneshi M, Chamseddine I, Munn LL, Schuemann - J, Paganetti H, Bertolet A. + Kumar CK, Gleason AC, Parameswaran GG, Summan A, Klein E, + Laxminarayan R, Nandi A. - Bull Math Biol. 2024 Oct 26;86(12):139. doi: - 10.1007/s11538-024-01371-4. + Lancet Reg Health Southeast Asia. 2024 Oct 16;31:100498. doi: + 10.1016/j.lansea.2024.100498. eCollection 2024 Dec. - > In particular, agent-based models (ABMs) tracking individual - > agents and their interactions are useful for their flexibility and - > ability to model complex behaviors. …Additionally, the integration - > into tumor ABMs of precise radiation dose calculations … + > We retrospectively estimated the population-level reductions in + > antibiotic use in India following the introduction of vaccines + > against Streptococcus pneumoniae and Haemophilius influenzae type + > B in the national immunization program for children in the + > mid-2010s and projected futu … -5. **Do COVID-19 Infectious Disease Models Incorporate the Social - Determinants of Health? A Systematic Review.** +5. **Mathematical frameworks for the analysis of norms.** - John-Baptiste AA, Moulin M, Li Z, Hamilton D, Crichlow G, Klein DE, - Alemu FW, Ghattas L, McDonald K, Asaria M, Sharpe C, Pandya E, - Moqueet N, Champredon D, Moghadas SM, Cooper LA, Pinto A, Stranges - S, Haworth-Brockman MJ, Galvani A, Ali S. + Sontuoso A. - Public Health Rev. 2024 Oct 10;45:1607057. doi: - 10.3389/phrs.2024.1607057. eCollection 2024. + Curr Opin Psychol. 2024 Oct 16;60:101930. doi: + 10.1016/j.copsyc.2024.101930. Online ahead of print. - > Most pertained to multiple countries (n = 15), the United States - > (n = 12), or China (n = 7). Most models were compartmental (n - > = 45) and agent-based (n = 7). Age was the most incorporated SDH - > (n = 74), followed by gender (n = 15), race/ethnicity (n = 7) and - > r … + > Research into society’s informal rules of conduct, or norms, has + > recently experienced a surge, extending across multiple academic + > disciplines. Despite this growth, the theoretical modeling of + > norms often remains siloed within specific paradigms, as different + > disciplines te … -6. **PhysiMeSS - a new physiCell addon for extracellular matrix - modelling.** +6. **CFD investigations of a shape-memory polymer foam-based + endovascular embolization device for the treatment of intracranial + aneurysms.** - Noël V, Ruscone M, Shuttleworth R, Macnamara CK. + Cabaniss T, Bodlak R, Liu Y, Colby G, Lee H, Bohnstedt B, Garziera + R, Holzapfel G, Lee CH. - GigaByte. 2024 Oct 16;2024:gigabyte136. doi: 10.46471/gigabyte.136. - eCollection 2024. + Res Sq \[Preprint\]. 2024 Oct 18:rs.3.rs-5014601. doi: + 10.21203/rs.3.rs-5014601/v1. - > The extracellular matrix, composed of macromolecules like collagen - > fibres, provides structural support to cells and acts as a barrier - > that metastatic cells degrade to spread beyond the primary tumour. - > While agent-based frameworks, such as PhysiCell, can simulate the - > … + > The hemodynamic and convective heat transfer effects of a + > patient-specific endovascular therapeutic agent based on shape + > memory polymer foam (SMPf) are evaluated using computational fluid + > dynamics studies for six patient-specific aneurysm geometries. The + > SMPf device … -7. **Neutrophils under the microscope: neutrophil dynamics in - infection, inflammation, and cancer revealed using intravital - imaging.** +7. **Investigating immersion and migration decisions for agent-based + modelling: A cautionary tale.** - Yam AO, Jakovija A, Gatt C, Chtanova T. + Bijak J, Modirrousta-Galian A, Higham PA, Prike T, Hinsch M, Nurse + S. - Front Immunol. 2024 Oct 8;15:1458035. doi: - 10.3389/fimmu.2024.1458035. eCollection 2024. + Open Res Eur. 2024 Oct 29;3:34. doi: 10.12688/openreseurope.15581.3. + eCollection 2023. - > Finally, we highlight how computational modeling techniques, - > especially agent-based modeling, complement experimental data by - > elucidating neutrophil kinetics at the level of individual cells - > as well as their collective behavior. … + > BACKGROUND: Agent-based modelling provides an appealing + > methodological choice for simulating human behaviour and + > decisions. …Our results act as a cautionary tale for agent-based + > modellers, highlighting that the modelling needs sh … -8. **Gardens reduce seasonal hunger gaps for farmland pollinators.** +8. **LLMs and generative agent-based models for complex systems + research.** - Timberlake TP, Tew NE, Memmott J. + Lu Y, Aleta A, Du C, Shi L, Moreno Y. - Proc Biol Sci. 2024 Oct;291(2033):20241523. doi: - 10.1098/rspb.2024.1523. Epub 2024 Oct 23. + Phys Life Rev. 2024 Oct 28;51:283-293. doi: + 10.1016/j.plrev.2024.10.013. Online ahead of print. - > Consistent with this pattern, bumblebee activity increased in - > gardens relative to farmland during early spring and late summer. - > An agent-based model reinforces this point, showing that timing, - > not quantity, of garden nectar supply enhances bumblebee colony gr - > … + > In particular, Generative Agent-Based Models (GABMs), which + > integrate LLMs to simulate human behavior, have attracted + > increasing public attention due to their potential to model + > complex interactions in a wide range of artificial environments. + > This pape … -9. **Tuning collective actuation of active solids by optimizing - activity localization.** +9. **Bacterial community dynamics as a result of growth-yield trade-off + and multispecies metabolic interactions toward understanding the gut + biofilm niche.** - Lazzari D, Dauchot O, Brito C. + Valiei A, Dickson AM, Aminian-Dehkordi J, Mofrad MRK. - Soft Matter. 2024 Oct 21. doi: 10.1039/d4sm00868e. Online ahead of - print. + BMC Microbiol. 2024 Oct 29;24(1):441. doi: + 10.1186/s12866-024-03566-0. - > Here, we investigate numerically how localizing activity to a - > fraction of modes enables the selection of non-trivial collective - > actuation. We perform numerical simulations of an agent-based - > model on triangular and disordered lattices and vary the - > concentratio … + > One example is gut mucosal communities, where dense, closely + > packed communities develop under the concurrent influence of + > nutrient transport from the lumen and fluid-mediated detachment of + > bacteria. In this study, we model a mucosal niche through a + > coupled agent- … -10. **Enhancing Medical Training Through Learning From Mistakes by - Interacting With an Ill-Trained Reinforcement Learning Agent.** +10. **Coevolution of norm psychology and cooperation through exapted + conformity.** - Kakdas YC, Kockara S, Halic T, Demirel D. + Kido Y, Takezawa M. - IEEE Trans Learn Technol. 2024;17:1248-1260. doi: - 10.1109/tlt.2024.3372508. Epub 2024 Mar 4. + Evol Hum Sci. 2024 Oct 24;6:e35. doi: 10.1017/ehs.2024.37. + eCollection 2024. - > This allows students to experience many outlier cases they might - > not encounter in an in-class educational model. In the assessment - > mode, an IRL-based method is used to evaluate how effective the - > participant is at correcting the mistakes performed by the RL - > agent. … + > This study theoretically explores the socialisation of humans + > under these norms. Our agent-based model simulates scenarios where + > diverse agents with heterogeneous norm psychologies engage in + > collective action to maximise their utility functions that capture + > t … ## Code of Conduct