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Expand Up @@ -9,13 +9,83 @@ document updated once a week or whenever there’s a push or pull request.
It performs a search on PubMed looking for the <a
href="https://pubmed.ncbi.nlm.nih.gov/?term=agent-based+model&amp;sort=date"
target="_blank">latest papers about Agent-Based Models</a>. The last
update was on 2024-08-11 00:44:58.
update was on 2024-08-18 00:44:05.

<div class="cell">

</div>

1. **Modeling the population health impact of accurate and inaccurate
1. **Of criminals and cancer: The importance of social bonds and innate
morality on cellular societies.**

Bukkuri A, Adler FR.

Cells Dev. 2024 Aug 14:203964. doi: 10.1016/j.cdev.2024.203964.
Online ahead of print.

> In this proof-of-concept paper, we draw on criminology to propose
> that cancer may alternatively be conceptualized as a relational
> problem: Although a cell’s genetics is essential, the influence of
> its interaction with other cells is equally important in
> determining its phenotype. …
2. **Paradoxes in the coevolution of contagions and institutions.**

St-Onge J, Burgio G, Rosenblatt SF, Waring TM, Hébert-Dufresne L.

Proc Biol Sci. 2024 Aug;291(2028):20241117. doi:
10.1098/rspb.2024.1117. Epub 2024 Aug 14.

> Epidemic models study the spread of undesired agents through
> populations, be it infectious diseases through a country,
> misinformation in social media or pests infesting a region.
> …Instead, interventions commonly come from local institutions such
> as public health departme …
3. **Effect of rotavirus vaccination on the burden of rotavirus disease
and associated antibiotic use in India: A dynamic agent-based
simulation analysis.**

Gleason A, Kumar CK, Klein E, Laxminarayan R, Nandi A.

Vaccine. 2024 Aug 12;42(22):126211. doi:
10.1016/j.vaccine.2024.126211. Online ahead of print.

> The objective of this study was to estimate the effects of the
> rotavirus vaccination program in India on disease burden and
> antibiotic misuse. METHODS: We built a dynamic agent-based model
> of rotavirus progression in children under five within each
> district i …
4. **Minds and markets as complex systems: an emerging approach to
cognitive economics.**

Johnson SGB, Schotanus PR, Kelso JAS.

Trends Cogn Sci. 2024 Aug 9:S1364-6613(24)00174-8. doi:
10.1016/j.tics.2024.07.003. Online ahead of print.

> We describe three ongoing research programs that strive toward
> these goals: (i) studying narratives as a cognitive and social
> representation used to guide decision-making; (ii) building
> cognitively informed agent-based models; and (iii) understanding
> markets …
5. **Breakdown of Boltzmann-type models for the alignment of
self-propelled rods.**

Murphy P, Perepelitsa M, Timofeyev I, Lieber-Kotz M, Islas B,
Igoshin OA.

Math Biosci. 2024 Aug 8:109266. doi: 10.1016/j.mbs.2024.109266.
Online ahead of print.

> We examine the accuracy of the kinetic model by comparing
> numerical solutions of the continuous equations to an agent-based
> model that implements the underlying rules governing microscopic
> alignment. …These results highlight the need to both develop …
6. **Modeling the population health impact of accurate and inaccurate
perceptions of harm from nicotine.**

Hannel T, Wei L, Muhammad-Kah RS, Largo EG, Sarkar M.
Expand All @@ -29,7 +99,7 @@ update was on 2024-08-11 00:44:58.
> representative data from the Population Assessment of Tobacco and
> Health (PAT …
2. **Interacting particle models on the impact of spatially
7. **Interacting particle models on the impact of spatially
heterogeneous human behavioral factors on dynamics of infectious
diseases.**

Expand All @@ -44,7 +114,7 @@ update was on 2024-08-11 00:44:58.
> system (SEEDS) via an agent-based biased random walk model on a tw
> …
3. **Simulation studies of social systems: telling the story based on
8. **Simulation studies of social systems: telling the story based on
provenance patterns.**

Wilsdorf P, Reinhardt O, Prike T, Hinsch M, Bijak J, Uhrmacher AM.
Expand All @@ -58,7 +128,7 @@ update was on 2024-08-11 00:44:58.
> involved in collecting and analysing primary data about human
> decisions, and …
4. **Semiparametric inference of effective reproduction number dynamics
9. **Semiparametric inference of effective reproduction number dynamics
from wastewater pathogen surveillance data.**

Goldstein IH, Parker DM, Jiang S, Minin VM.
Expand All @@ -70,7 +140,7 @@ update was on 2024-08-11 00:44:58.
> using the same framework. We test this modeling framework in an
> agent-based simulation study with a realistic data generatin …
5. **Effects of Intervention Timing on Health-Related Fake News:
10. **Effects of Intervention Timing on Health-Related Fake News:
Simulation Study.**

Gwon N, Jeong W, Kim JH, Oh KH, Jun JK.
Expand All @@ -83,71 +153,6 @@ update was on 2024-08-11 00:44:58.
> agent-based model, was used as the analytical tool. RESULTS: Fake
> news lasted …
6. **Near-field hydrodynamic interactions determine travelling wave
directions of collectively beating cilia.**

Cheng Z, Vilfan A, Wang Y, Golestanian R, Meng F.

J R Soc Interface. 2024 Aug;21(217):20240221. doi:
10.1098/rsif.2024.0221. Epub 2024 Aug 7.

> USA 118, e2102828118), we find that the first harmonic mode in the
> driving force acting on each individual cilium can determine the
> direction of the metachronal wave after considering the finite
> size of the beating trajectories, which is confirmed by our
> agent-based …
7. **Emergence of collective behaviours from local Voronoi topological
perception.**

Gonzalez I, Tisdell J, Choksi R, Nave JC.

R Soc Open Sci. 2024 Jun 5;11(6):231537. doi: 10.1098/rsos.231537.
eCollection 2024 Jun.

> This article addresses how diverse collective behaviours arise
> from simple and realistic decisions made entirely at the level of
> each agent’s personal space in the sense of the Voronoi diagram.
> We present a discrete-time model in two dimensions in which
> individual agents a …
8. **Developing an Agent-Based Model that Predicts Listeria spp.
Transmission to Assess Listeria Control Strategies in Retail
Stores.**

Jung Y, Qian C, Barnett-Neefs C, Ivanek R, Wiedmann M.

J Food Prot. 2024 Jul 31:100337. doi: 10.1016/j.jfp.2024.100337.
Online ahead of print.

> However, limited tools are available for retailers to assess
> practices that can enhance control of Listeria transmission to
> fresh produce. Therefore, we developed an agent-based model that
> can simulate Listeria transmission in retail produce sections to
> optim …
9. **Control of complex systems with generalized embedding and
empirical dynamic modeling.**

Park J, Sugihara G, Pao G.

PLoS One. 2024 Aug 1;19(8):e0305408. doi:
10.1371/journal.pone.0305408. eCollection 2024.

> Further, many data-driven approaches consist of abstract internal
> representations that may have no obvious connection to the
> underlying dynamics and control, or, require extensive model
> design and training. Here, we remove these constraints by
> demonstrating model pr …
10. **Extensive loss of forage diversity in social bees owing to flower
constancy in simulated environments.**

Grüter C, Segers FHID, Hayes L.

Proc Biol Sci. 2024 Jul;291(2027):20241036. doi:
10.1098/rspb.2024.1036. Epub 2024 Jul 31.

## Code of Conduct

Please note that the PHS-7045-egga project is released with a
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