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strambc authored May 27, 2021
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# 4DN Microscopy Metadata Reader

This JAVA software uses the Bio-Formats library and the OME-XML metadata structure to accesses all the OME-compatible metadata present in the header of a user selected image data file and maps it to the the scalable [4DN-BINA-OME](https://zenodo.org/record/4710731) Microscopy Metadata specifications that extend the [OME Data Model](https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html) to produce a temporary, Micro-MetaApp-compatible JSON object that can be read by Micro-Meta App. The object is then passed on to the Micro-Meta App and read by the Manage Settings section of the App to pre-popululate the corresponding metadata fields.
This JAVA software uses the Bio-Formats library and the OME-XML metadata structure to accesses all the OME-compatible metadata present in the header of a user selected image data file and maps it to the the scalable [4DN-BINA-OME](https://zenodo.org/record/4710731) Microscopy Metadata specifications that extend the [OME Data Model](https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html) to produce a temporary, Micro-Meta App-compatible JSON object that can be read by [Micro-Meta App](https://wu-bimac.github.io/MicroMetaApp.github.io/). The object is then passed on to the Micro-Meta App and read by the Manage Settings section of the App to pre-popululate the corresponding metadata fields.

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