annotation.ttl

@prefix xrr: <http://i3s.unice.fr/xr2rml#> .
@prefix rr:  <http://www.w3.org/ns/r2rml#> .
@prefix rml: <http://semweb.mmlab.be/ns/rml#> .
@prefix rdfs:   <http://www.w3.org/2000/01/rdf-schema#>.
@prefix owl:    <http://www.w3.org/2002/07/owl#>.
@prefix xsd:    <http://www.w3.org/2001/XMLSchema#> .

@prefix bibo:   <http://purl.org/ontology/bibo/> .
@prefix dce:    <http://purl.org/dc/elements/1.1/>.
@prefix dct:    <http://purl.org/dc/terms/>.
@prefix fabio:  <http://purl.org/spar/fabio/> .
@prefix foaf:   <http://xmlns.com/foaf/0.1/>.
@prefix frbr:   <http://purl.org/vocab/frbr/core#>.
@prefix oa:     <http://www.w3.org/ns/oa#>.
@prefix prov:   <http://www.w3.org/ns/prov#>.
@prefix schema: <http://schema.org/>.

@prefix ncbi: <http://identifiers.org/taxonomy/> .

@prefix issap:  <http://ns.inria.fr/issa/property/> .

<#Selector>
	
	xrr:logicalSource [
		xrr:query """db.Entities.find()""";
	];
	
	rr:subjectMap [ 
		rr:template "SelectorBlankNode{$._id}" ;
		rr:termType rr:BlankNode;
		rr:class oa:TextPositionSelector;
		rr:class oa:TextQuoteSelector;
	];
	
	rr:predicateObjectMap [
		rr:predicate oa:exact;
		rr:objectMap [
			xrr:reference "$.surface_form";
			rr:termType rr:Literal;
			rr:datatype xsd:string;
		];
	];
	rr:predicateObjectMap [
		rr:predicate oa:start;
		rr:objectMap [
			xrr:reference "$.start_offset";
			rr:termType rr:Literal;
			rr:datatype xsd:integer;
		];
	];
	rr:predicateObjectMap [
		rr:predicate oa:end;
		rr:objectMap [
			xrr:reference "$.end_offset";
			rr:termType rr:Literal;
			rr:datatype xsd:integer;
		];
	].

<#Target>
	
	xrr:logicalSource [
		xrr:query """db.Entities.find()""";
	];
	
	rr:subjectMap [
		rr:template "TargetBlankNode{$._id}";
		rr:termType rr:BlankNode;
	];
	
	rr:predicateObjectMap [
		rr:predicate oa:hasSource;
		rr:objectMap [ rr:template "http://ns.inria.fr/d2kab/article/{$.doc_id}#{$.section_name}"; ];
	];
	rr:predicateObjectMap [
		rr:predicate oa:hasSelector;
		rr:objectMap [
			rr:template "SelectorBlankNode{$._id}";
			rr:termType rr:BlankNode;
		];
	].

<#Anno>
	a rr:TripleMap;
	xrr:logicalSource [
		xrr:query """db.Entities.find()""";
	];
	
	rr:subjectMap [
		rr:template "http://ns.inria.fr/d2kab/annotation/{$.entity_id}";
		rr:class oa:Annotation;
	];
	
	rr:predicateObjectMap [
		rr:predicate oa:hasBody;
		rr:objectMap [
			xrr:reference "$.reference";
			rr:termType rr:IRI;
		];
	];
	
    # Straight relation between the annotation and the article
	rr:predicateObjectMap [
		rr:predicate schema:about;
		rr:objectMap [
			rr:template "https://pubmed.ncbi.nlm.nih.gov/{$.doc_id}";
		];
	];
    
	rr:predicateObjectMap [
		rr:predicate oa:hasTarget;
		rr:objectMap [
			rr:template "TargetBlankNode{$._id}";
			rr:termType rr:BlankNode;
		];
	].