readme update

.github/workflows/test.yaml

@@ -65,3 +65,5 @@ jobs:
           coverage report
       - name: Upload coverage
         uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}

README.md

@@ -1,19 +1,20 @@
-# pycea
-
 [![Tests][badge-tests]][link-tests]
 [![Documentation][badge-docs]][link-docs]
 
 [badge-tests]: https://img.shields.io/github/actions/workflow/status/colganwi/pycea/test.yaml?branch=main
 [link-tests]: https://github.com/YosefLab/pycea/actions/workflows/test.yml
 [badge-docs]: https://img.shields.io/readthedocs/pycea
 
-Scverse lineage tracing toolkit
+<img
+  src="https://raw.githubusercontent.com/YosefLab/pycea/main/docs/_static/img/pycea_logo.svg"
+  class="dark-light" align="right" width="350" alt="image"
+/>
 
-## Getting started
+# Pycea - lineage tracing analysis
 
-Please refer to the [documentation][link-docs]. In particular, the
+Scverse lineage tracing analysis toolkit built to work with [TreeData][treedata].
 
--   [API documentation][link-api].
+To learn more about pycea, please refer to the [documentation][link-docs] or the [getting started guide][link-getting-started].
 
 ## Installation
 
@@ -42,15 +43,16 @@ See the [changelog][changelog].
 
 ## Contact
 
-For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
-If you found a bug, please use the [issue tracker][issue-tracker].
+For questions and bug reports please use the [issue tracker][issue-tracker].
 
 ## Citation
 
 > t.b.a
 
+[treedata]: https://treedata.readthedocs.io/
 [scverse-discourse]: https://discourse.scverse.org/
 [issue-tracker]: https://github.com/colganwi/pycea/issues
 [changelog]: https://pycea.readthedocs.io/latest/changelog.html
 [link-docs]: https://pycea.readthedocs.io
 [link-api]: https://pycea.readthedocs.io/latest/api.html
+[link-getting-started]: https:/pycea.readthedocs.io/en/latest/notebooks/getting-started.html

docs/conf.py

@@ -120,6 +120,8 @@
     "navigation_with_keys": False,
 }
 
+html_logo = "_static/img/pycea_logo.svg"
+
 pygments_style = "default"
 
 nitpick_ignore = [