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Unable to Convert Pathway ID to Gene Set #743

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DarioS opened this issue Nov 21, 2024 · 0 comments
Open

Unable to Convert Pathway ID to Gene Set #743

DarioS opened this issue Nov 21, 2024 · 0 comments

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@DarioS
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DarioS commented Nov 21, 2024

For Reactome and KEGG, is it possible to get a gene list for every row in the result table, to be able to write a custom simplify function? Or should this be done inside a function such as gseKEGG? After all, gseKEGG calculates adjusted p-values, which depends on the number of gene sets considered, so filtering should happen before results creation and p-value adjustment.

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