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For Reactome and KEGG, is it possible to get a gene list for every row in the result table, to be able to write a custom simplify function? Or should this be done inside a function such as gseKEGG? After all, gseKEGG calculates adjusted p-values, which depends on the number of gene sets considered, so filtering should happen before results creation and p-value adjustment.
The text was updated successfully, but these errors were encountered:
For Reactome and KEGG, is it possible to get a gene list for every row in the result table, to be able to write a custom simplify function? Or should this be done inside a function such as
gseKEGG
? After all,gseKEGG
calculates adjusted p-values, which depends on the number of gene sets considered, so filtering should happen before results creation and p-value adjustment.The text was updated successfully, but these errors were encountered: