pkgs: HPC packages need change from apt to environment modules/spack

[bowling233]

目前暂时采用 APT 安装系统级别的 oneAPI 和 CUDA。

等 Spack 和 Lmod 测试完成，应当将 HPC 相关包依赖从 APT 迁移出去。

[bowling233]

参考：编译器、MPI库、数学库、应用工具 - 上海交大超算平台用户手册，可学习他们的部署、使用和测试方式

[bowling233]

spack 安装 intel-oneapi-* 出现磁盘空间不足的问题

# cat spack-build-out.txt 
==> intel-oneapi-itac: Executing phase: 'install'
==> [2025-01-15-01:52:44.929515] 'bash' 'l_itac_oneapi_p_2022.1.0.158_offline.sh' '-s' '-a' '-s' '--action' 'install' '--eula' 'accept' '--install-dir' '/opt/spack/opt/spack/linux-debian12-haswell/gcc-12.2.0/intel-oneapi-itac-2022.1.0-q2rag6dchjnqruamgbuozacvh7v65igr'
Checking system requirements...
Error:
System requirements are not met.
Failed to check that system has enough disk space.
Cannot get free space: volume containing '/opt' folder is not valid or not ready to work with.
Please make sure that your target directory has at least 132.5 MB available for installation.

那么它是怎么检查磁盘空间的呢？看看 log：

<Bootstrapper> CHECKING PREREQUISITES IS STARTED
PreRequisite for free disk space begin [PreRequisiteFreeDiskSpace]
Create test file /home/bowling/intel/oneapi/installer/tmp.1736884181290 of size 138969532 bytes.
<RemoveFile>: file '/home/bowling/intel/oneapi/installer/tmp.1736884181290' is removed.
PreRequisite for free disk space passed
PreRequisite for free disk space end [PreRequisiteFreeDiskSpace]
<Bootstrapper> Prerequisite 'Free Disk Space' is correct!

在家目录创建临时文件以检测磁盘空间。不管是空间还是权限，都是在家目录下检查的，即使 --install-dir 并不在家目录。抽象嗷。

那么问题来了，它是在 Docker 内 chroot 的 root 的家目录中创建文件失败了吗？为什么会失败呢？

[bowling233]

/tmp 下的 installer log 信息：

<Bootstrapper> CHECKING PREREQUISITES IS STARTED
PreRequisite for free disk space begin [PreRequisiteFreeDiskSpace]
Cannot get free space: volume containing '/opt' folder is not valid or not ready to work with.
Please make sure that your target directory has at least 132.5 MB available for installation.
MESSAGE : PreRequisite for free disk space failed
MESSAGE : Title [Failed to check that system has enough disk space.]
MESSAGE : Description [Cannot get free space: volume containing '/opt' folder is not valid or not ready to work with.
irectory has at least 132.5 MB available for installation.]
MESSAGE : PreRequisite for free disk space end [PreRequisiteFreeDiskSpace]

在 chroot 环境内的 df -h 结果：

+ df -h
Filesystem      Size  Used Avail Use% Mounted on
/dev            4.0M     0  4.0M   0% /dev
/run            126G     0  126G   0% /run
/tmp            126G   35M  126G   1% /tmp

难道必须使其挂载吗？

[bowling233]

intel-oneapi-* fixed df77018

bind mount 根目录即可