update h5py

ZeitgeberH · Feb 18, 2024 · e796208 · e796208
1 parent 8db2fe9
commit e796208
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/patchview/patchview.py b/patchview/patchview.py
@@ -1,6 +1,7 @@
 """
 Patchviewer by M.H.
 """
+import PyQt5
 from PyQt5 import QtGui, QtWidgets, QtCore
 from PyQt5.QtWidgets import QMessageBox, QTableWidgetItem
 from PyQt5.QtWidgets import QSplitter
@@ -6946,7 +6947,7 @@ def getSingleTraceFeature_ABF(self, v, t, seriesIdx):
         dvdt = ephys_ft.calculate_dvdt(v, t, filterHighCutFreq_signal / 1000)
         dvdt1 = np.insert(dvdt, 0, 0)
         if EphysObject._spikes_df.size:
-            peaks = spike_df["peak_index"].to_list()  ## list of peak index
+            peaks = [int(p_) for p_ in spike_df["peak_index"].to_list()]  ## list of peak index
             try:
                 maxSPwidth = int(spike_df["width"].max(skipna=True) * sampleRate * 2.5)
             except:
@@ -6974,7 +6975,6 @@ def getSingleTraceFeature_ABF(self, v, t, seriesIdx):
             for j, p in enumerate(peaks):
                 start_index = p - before_
                 end_index = p + after_
-                # print(start_index, end_index, sweepCount)
                 waves[:, j] = v_filtered[start_index:end_index]
                 waves_dvdt[:, j] = dvdt1[start_index:end_index]
         else:

diff --git a/requirements.txt b/requirements.txt
@@ -15,7 +15,7 @@ PyOpenGL_accelerate>=3.1.6 ; sys_platform == 'win32'
 cython
 neo
 pylru==1.2.1
-h5py==3.7.0
+h5py
 joblib
 future>=0.18.3
 pyYAML
-Original file line number
+Diff line change
@@ Expand Up / @@ -15,7 +15,7 @@ PyOpenGL_accelerate>=3.1.6 ; sys_platform == 'win32' @@
     cython
     neo
     pylru==1.2.1
-    h5py==3.7.0
+    h5py
     joblib
     future>=0.18.3
     pyYAML
@@ Expand Down @@