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Update README.md
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augeorge authored Sep 1, 2023
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Supporting code for Bayesian Transporter research - still under development.

### Todo:
- update installation guide
- update examples
- refactor MLE tuning code
- update installation requirements and getting started

### Usage:
for MLE use `run_optimizer.py`, for Bayesian use `run_emcee.py` or `run_pocomc.py`
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- parallelization issues with libroadrunner. see: https://github.com/sys-bio/tellurium/issues/563
- pocoMC sampler bugs, use my fork with fix. see: https://github.com/minaskar/pocomc/issues/22 and my fork: https://github.com/augeorge/pocomc

August George, 2023
### Docs:
- https://zuckermanlab.github.io/Bayesian_Transporter/

August George, 2023

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