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Hi
When I run figaro from the command line I get the following output.
Traceback (most recent call last):
File "/home/ethan/figaro/figaro/figaro.py", line 218, in
main()
File "/home/ethan/figaro/figaro/figaro.py", line 210, in main
resultTable, forwardCurve, reverseCurve = trimParameterPrediction.performAnalysisLite(parameters.inputDirectory.value, parameters.minimumCombinedReadLength.value, subsample = parameters.subsample.value, percentile = parameters.percentile.value, forwardPrimerLength=parameters.forwardPrimerLength.value, reversePrimerLength=parameters.reversePrimerLength.value, namingStandardAlias=fileNamingStandard)
File "/home/ethan/figaro/figaro/trimParameterPrediction.py", line 448, in performAnalysisLite
forwardReadLength, reverseReadLength = checkReadLengths(fastqList)
File "/home/ethan/figaro/figaro/trimParameterPrediction.py", line 407, in checkReadLengths
raise fastqHandler.FastqValidationError("Unable to validate fastq files enough to perform this operation. Please check log for specific error(s).") fastqHandler.FastqValidationError: Unable to validate fastq files enough to perform this operation. Please check log for specific error(s).
What can be done to deal with the Unable to validate fastq files enough to perform this operation error. My log is empty.
Thank you and best wishes
Ethan
The text was updated successfully, but these errors were encountered:
Hi
When I run figaro from the command line I get the following output.
Traceback (most recent call last):
File "/home/ethan/figaro/figaro/figaro.py", line 218, in
main()
File "/home/ethan/figaro/figaro/figaro.py", line 210, in main
resultTable, forwardCurve, reverseCurve = trimParameterPrediction.performAnalysisLite(parameters.inputDirectory.value, parameters.minimumCombinedReadLength.value, subsample = parameters.subsample.value, percentile = parameters.percentile.value, forwardPrimerLength=parameters.forwardPrimerLength.value, reversePrimerLength=parameters.reversePrimerLength.value, namingStandardAlias=fileNamingStandard)
File "/home/ethan/figaro/figaro/trimParameterPrediction.py", line 448, in performAnalysisLite
forwardReadLength, reverseReadLength = checkReadLengths(fastqList)
File "/home/ethan/figaro/figaro/trimParameterPrediction.py", line 407, in checkReadLengths
raise fastqHandler.FastqValidationError("Unable to validate fastq files enough to perform this operation. Please check log for specific error(s).")
fastqHandler.FastqValidationError: Unable to validate fastq files enough to perform this operation. Please check log for specific error(s).
What can be done to deal with the Unable to validate fastq files enough to perform this operation error. My log is empty.
Thank you and best wishes
Ethan
The text was updated successfully, but these errors were encountered: