Permission denied (publickey).

[bstamps]

I'm having issues pulling the repo- it seems as though following the instructions results in several subdirectories not cloning correctly from their respective repositories, specifically 'miqScoreNGSReadCountPublic' and 'Figaro'. During the clone both display the below error.

[email protected]: Permission denied (publickey). fatal: Could not read from remote repository.

Is this a current permissions issue with those repositories or folders?

Thank you! Looking forward to trying this tool.

[michael-weinstein]

Strange. Can you send me the exact command you ran that caused this error? From: Blake Stamps, Ph.D. ***@***.***> Sent: Wednesday, September 29, 2021 11:07 AM To: Zymo-Research/miqScore16SPublic ***@***.***> Cc: Subscribed ***@***.***> Subject: [Zymo-Research/miqScore16SPublic] Permission denied (publickey). (#2) I'm having issues pulling the repo- it seems as though following the instructions results in several subdirectories not cloning correctly from their respective repositories, specifically 'miqScoreNGSReadCountPublic' and 'Figaro'. During the clone both display the below error. ***@***.*** ***@***.***> : Permission denied (publickey). fatal: Could not read from remote repository. Is this a current permissions issue with those repositories or folders? Thank you! Looking forward to trying this tool. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#2> , or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACEYNLI35ZVPQGMDKA5GRRDUENIUZANCNFSM5FAPSIEQ> . <https://github.com/notifications/beacon/ACEYNLIEIFUXWYLD7X3YPITUENIUZA5CNFSM5FAPSIE2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4PCHCN3A.gif>

[bstamps]

Sure-

git clone --recursive https://github.com/Zymo-Research/miqScore16SPublic.git

[maddne]

any follow-up?
having the same issue

[kenlassesen]

I also have the same issue.

Submodule 'Figaro' ([email protected]:Zymo-Research/Figaro.git) registered for path 'Figaro'
Submodule 'miqScoreNGSReadCountPublic' ([email protected]:Zymo-Research/miqScoreNGSReadCountPublic.git) registered for path 'miqScoreNGSReadCountPublic'
Cloning into 'E:/GitHub/miqScore16SPublic/Figaro'...
Host key verification failed.
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.

[zxl124]

Not sure if this applies to everyone, but the permission denied(publickey) error could be resolved by setting up your github SSH keys. One of our colleagues run into the same error, setting up the SSH keys solved it for him. Give it a try. https://docs.github.com/en/authentication/troubleshooting-ssh/error-permission-denied-publickey?platform=linux