azure-pipelines.yml

jobs:
  - job:
    displayName: CompuCell3D
    pool:
      vmImage: 'ubuntu-20.04'

    steps:
      - bash: echo "##vso[task.prependpath]$CONDA/bin"
        displayName: Add conda to PATH

      - bash: conda create --yes --quiet --name cc3d_2020 python=3.7
        displayName: Create Anaconda environment

      - bash: git clone https://github.com/CompuCell3D/cc3d_build_scripts.git
        displayName: Clone the build scripts

      - bash: |
          sudo apt-get purge --auto-remove swig
          sudo apt-get install -y swig3.0
        displayName: Install swig 4 and install swig3

      - bash: |
          apt-get remove swig -y
          source activate cc3d_2020
          conda config --set channel_priority false
          conda install -c conda-forge numpy scipy pandas jinja2 webcolors vtk=8.2 pyqt pyqtgraph deprecated qscintilla2 jinja2 chardet cmake swig=3 requests -y
          conda install -c compucell3d tbb_full_dev -y
          pip install libroadrunner
          pip install antimony
          pip install psutil
        displayName: Install Anaconda packages
      - bash: |
          PWD=`pwd`
          echo "##vso[task.setvariable variable=PWD]PWD"
        displayName: Set current working directory
      - bash: |
          source activate base
          cd cc3d_build_scripts/linux/400/
          python build.py --prefix=~/410_auto --source-root="$PWD/../../../" --build-dir=~/410_auto_build --version=4.1.0 --cores=2 --conda-env-name=cc3d_2020
        displayName: Build CC3d
      - bash: |
          source activate cc3d_2020
          cp -rf cc3d/tests ~/410_auto/lib/site-packages/cc3d
          sed -i 's/<path to where cc3d is installed>/~\/410_auto/g'  CompuCell3D/core/Demos/CallableCC3D/environment_var_setters/cc3d_caller_env_var_set_linux.sh
          sed -i "s~<path to where python executable is. Make sure it is same python as used by cc3d>~$(which python)~g"  CompuCell3D/core/Demos/CallableCC3D/environment_var_setters/cc3d_caller_env_var_set_linux.sh
          source CompuCell3D/core/Demos/CallableCC3D/environment_var_setters/cc3d_caller_env_var_set_linux.sh
          cd CompuCell3D/core/test_suite
          python regression_tests_runner.py --run-command=~/410_auto/runScript.sh --output-dir=~/out/
        displayName: Run Integration Tests