diff --git a/docs/index.html b/docs/index.html
index b959026..357d10c 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -593,8 +593,8 @@
ProteinFlow Stable Releases
the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list
- exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
- if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters
+ exclude_based_on_cdr : list, optional
+ if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
load_ligands : bool, default False
if `True`, load ligands from the PDB files
exclude_chains_without_ligands : bool, default False
@@ -760,8 +760,8 @@ ProteinFlow Stable Releases
the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list
- exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
- if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters
+ exclude_based_on_cdr : list, optional
+ if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
random_seed : int, default 42
random seed for reproducibility (set to `None` to use a random seed)
exclude_chains_without_ligands : bool, default False
@@ -1136,8 +1136,8 @@ Parameters
the sequence similarity threshold for excluding chains
exclude_clusters
: bool
, default False
if True
, exclude clusters that contain chains similar to chains in the exclude_chains
list
-exclude_based_on_cdr
: {"H1", "H2", "H3", "L1", "L2", "L3"}
, optional
-if given and exclude_clusters
is True
+ the dataset is SAbDab, exclude files based on only the given CDR clusters
+exclude_based_on_cdr
: list
, optional
+if given and exclude_clusters
is True
+ the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
load_ligands
: bool
, default False
if True
, load ligands from the PDB files
exclude_chains_without_ligands
: bool
, default False
@@ -1277,8 +1277,8 @@ Returns
the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list
- exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
- if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters
+ exclude_based_on_cdr : list, optional
+ if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
load_ligands : bool, default False
if `True`, load ligands from the PDB files
exclude_chains_without_ligands : bool, default False
@@ -1454,8 +1454,8 @@ Parameters
the sequence similarity threshold for excluding chains
exclude_clusters
: bool
, default False
if True
, exclude clusters that contain chains similar to chains in the exclude_chains
list
-exclude_based_on_cdr
: {"H1", "H2", "H3", "L1", "L2", "L3"}
, optional
-if given and exclude_clusters
is True
+ the dataset is SAbDab, exclude files based on only the given CDR clusters
+exclude_based_on_cdr
: list
, optional
+if given and exclude_clusters
is True
+ the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
random_seed
: int
, default 42
random seed for reproducibility (set to None
to use a random seed)
exclude_chains_without_ligands
: bool
, default False
@@ -1537,8 +1537,8 @@ Returns
the sequence similarity threshold for excluding chains
exclude_clusters : bool, default False
if `True`, exclude clusters that contain chains similar to chains in the `exclude_chains` list
- exclude_based_on_cdr : {"H1", "H2", "H3", "L1", "L2", "L3"}, optional
- if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters
+ exclude_based_on_cdr : list, optional
+ if given and `exclude_clusters` is `True` + the dataset is SAbDab, exclude files based on only the given CDR clusters (choose from "H1", "H2", "H3", "L1", "L2", "L3")
random_seed : int, default 42
random seed for reproducibility (set to `None` to use a random seed)
exclude_chains_without_ligands : bool, default False