From 7f7be04247ded0ba5394893f20df4abef304f228 Mon Sep 17 00:00:00 2001 From: Andreas Bender Date: Sat, 24 Feb 2024 16:43:23 +0100 Subject: [PATCH] update vignettes veteran data usage --- vignettes/basics.Rmd | 2 +- vignettes/splines.Rmd | 2 +- vignettes/strata.Rmd | 2 +- vignettes/tveffects.Rmd | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/vignettes/basics.Rmd b/vignettes/basics.Rmd index fff1c470..f5a6ee6f 100644 --- a/vignettes/basics.Rmd +++ b/vignettes/basics.Rmd @@ -56,7 +56,7 @@ library(mgcv) library(pammtools) library(dplyr) -data("veteran", package = "survival") # load veteran data +veteran <- survival::veteran # remove ties to illustrate equivalence with Cox approach vetu <- filter(veteran, !duplicated(time)) ped_vetu <- vetu %>% diff --git a/vignettes/splines.Rmd b/vignettes/splines.Rmd index d9d4c999..3374be7c 100644 --- a/vignettes/splines.Rmd +++ b/vignettes/splines.Rmd @@ -35,7 +35,7 @@ We first illustrate the estimation on non-linear smooth effects using the `veteran` data from the survival package: ```{r} -data("veteran", package="survival") # load veteran package +veteran <- survival::veteran # load veteran package veteran <- veteran %>% mutate( trt = 1+(trt == 2), diff --git a/vignettes/strata.Rmd b/vignettes/strata.Rmd index 5fbcdb6d..659d786d 100644 --- a/vignettes/strata.Rmd +++ b/vignettes/strata.Rmd @@ -43,7 +43,7 @@ from the `survival` package, where the cell type of the lung cancer had four levels: ```{r} -data("veteran") # load veteran data +veteran <- survival::veteran # load veteran data veteran <- veteran %>% mutate( trt = 1*(trt == 2), diff --git a/vignettes/tveffects.Rmd b/vignettes/tveffects.Rmd index 330d876a..6921fb9b 100644 --- a/vignettes/tveffects.Rmd +++ b/vignettes/tveffects.Rmd @@ -71,7 +71,7 @@ Karnofsky performance scores `karno` (the higher the better), `age` and whether ```{r} # for some reason the prior variable is coded 0/10 instead of 0/1 -data("veteran", package = "survival") +veteran <- survival::veteran veteran <- veteran %>% mutate( trt = 1L * (trt == 2),