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TF and their target at gene level #32

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harimchun opened this issue Feb 14, 2023 · 1 comment
Open

TF and their target at gene level #32

harimchun opened this issue Feb 14, 2023 · 1 comment

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@harimchun
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harimchun commented Feb 14, 2023

Hi, I am using RcisTarget for the GRN construction using SCENIC.

I wanted to investigate the Rcistarget database in order to know which genes are transcription factors and which genes are target genes of specific transcription factors.

With the downloaded 'feather' file, I cannot get the information I want to see.

If there's an additional file or anyway to get the TF and its target, how can I retrieve them?

The desired format would be like below

image

Thanks in advance.

Best,
Harim

@harimchun harimchun changed the title TF and their target in gene level TF and their target at gene level Feb 14, 2023
@AlimadadiAhmad
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@harimchun Hi! Have you figured this out yet? I also need to obtain TF-target information from the Rcistarget database.

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