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If running FM with time-invariant catchability and a prior, FM will decrease q_sigma by a factor of sqrt(1/nyrs).
q_sigma
q_srv is a vector of length nyrs (styr to endyr) even when derived from a single parameter
flatfish/src/fm.tpl
Line 674 in 3d9b975
however, the catchability prior is applied to the entire q_srv vector rather than a single parameter https://github.com/afsc-assessments/flatfish/blob/3d9b975bec0df9b63d8369226e5f3987f15e5b34/src/fm.tpl#L1460C1-L1463C7
effectively multiplying q_sigma by sqrt(1/nyrs)
This may be intended, but wanted to flag!
The text was updated successfully, but these errors were encountered:
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If running FM with time-invariant catchability and a prior, FM will decrease
q_sigma
by a factor of sqrt(1/nyrs).q_srv is a vector of length nyrs (styr to endyr) even when derived from a single parameter
flatfish/src/fm.tpl
Line 674 in 3d9b975
however, the catchability prior is applied to the entire q_srv vector rather than a single parameter https://github.com/afsc-assessments/flatfish/blob/3d9b975bec0df9b63d8369226e5f3987f15e5b34/src/fm.tpl#L1460C1-L1463C7
effectively multiplying
q_sigma
by sqrt(1/nyrs)This may be intended, but wanted to flag!
The text was updated successfully, but these errors were encountered: