From 2d65da7a35d0d2cce81cec03d058ff2a42d33355 Mon Sep 17 00:00:00 2001
From: Guilhem Saurel <guilhem.saurel@laas.fr>
Date: Tue, 11 Jul 2023 09:07:40 +0200
Subject: [PATCH] ipython & pybind11 are mandatory

---
 poetry.lock    | 937 ++++++++++++++++++++++++++-----------------------
 pyproject.toml |   4 +-
 2 files changed, 509 insertions(+), 432 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 5749addb..7ad09d7e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -60,17 +60,6 @@ six = "*"
 [package.extras]
 test = ["astroid", "pytest"]
 
-[[package]]
-name = "async-generator"
-version = "1.10"
-description = "Async generators and context managers for Python 3.5+"
-optional = false
-python-versions = ">=3.5"
-files = [
-    {file = "async_generator-1.10-py3-none-any.whl", hash = "sha256:01c7bf666359b4967d2cda0000cc2e4af16a0ae098cbffcb8472fb9e8ad6585b"},
-    {file = "async_generator-1.10.tar.gz", hash = "sha256:6ebb3d106c12920aaae42ccb6f787ef5eefdcdd166ea3d628fa8476abe712144"},
-]
-
 [[package]]
 name = "attrs"
 version = "23.1.0"
@@ -116,36 +105,33 @@ files = [
 
 [[package]]
 name = "black"
-version = "23.3.0"
+version = "23.7.0"
 description = "The uncompromising code formatter."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -325,97 +311,97 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.1.0"
+version = "3.2.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 ]
 
 [[package]]
 name = "click"
-version = "8.1.3"
+version = "8.1.4"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "click-8.1.3-py3-none-any.whl", hash = "sha256:bb4d8133cb15a609f44e8213d9b391b0809795062913b383c62be0ee95b1db48"},
-    {file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
+    {file = "click-8.1.4-py3-none-any.whl", hash = "sha256:2739815aaa5d2c986a88f1e9230c55e17f0caad3d958a5e13ad0797c166db9e3"},
+    {file = "click-8.1.4.tar.gz", hash = "sha256:b97d0c74955da062a7d4ef92fadb583806a585b2ea81958a81bd72726cbb8e37"},
 ]
 
 [package.dependencies]
@@ -423,13 +409,13 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
 [[package]]
 name = "cmeel"
-version = "0.45.0"
+version = "0.46.0"
 description = "Create Wheel from CMake projects"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
-    {file = "cmeel-0.45.0-py3-none-any.whl", hash = "sha256:0a5458c0f52f07522316c693f21bdb3fbc98899522cd331b2c3cba13dd1f0399"},
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+    {file = "cmeel-0.46.0-py3-none-any.whl", hash = "sha256:584b303f74c2df7b3d72d12acff1d98245fedb5bd96ef7b0e60b24d8cf91581e"},
+    {file = "cmeel-0.46.0.tar.gz", hash = "sha256:7a8ced5917f4c7f09ba74ac33796b92dfe1374cbae3bde18caedcc41540cb361"},
 ]
 
 [package.dependencies]
@@ -615,13 +601,13 @@ files = [
 
 [[package]]
 name = "configargparse"
-version = "1.5.3"
+version = "1.5.5"
 description = "A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
-    {file = "ConfigArgParse-1.5.3-py3-none-any.whl", hash = "sha256:18f6535a2db9f6e02bd5626cc7455eac3e96b9ab3d969d366f9aafd5c5c00fe7"},
-    {file = "ConfigArgParse-1.5.3.tar.gz", hash = "sha256:1b0b3cbf664ab59dada57123c81eff3d9737e0d11d8cf79e3d6eb10823f1739f"},
+    {file = "ConfigArgParse-1.5.5-py3-none-any.whl", hash = "sha256:541360ddc1b15c517f95c0d02d1fca4591266628f3667acdc5d13dccc78884ca"},
+    {file = "ConfigArgParse-1.5.5.tar.gz", hash = "sha256:363d80a6d35614bd446e2f2b1b216f3b33741d03ac6d0a92803306f40e555b58"},
 ]
 
 [package.extras]
@@ -900,13 +886,13 @@ build = ["cmeel-eigen"]
 
 [[package]]
 name = "exceptiongroup"
-version = "1.1.1"
+version = "1.1.2"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "exceptiongroup-1.1.1-py3-none-any.whl", hash = "sha256:232c37c63e4f682982c8b6459f33a8981039e5fb8756b2074364e5055c498c9e"},
-    {file = "exceptiongroup-1.1.1.tar.gz", hash = "sha256:d484c3090ba2889ae2928419117447a14daf3c1231d5e30d0aae34f354f01785"},
+    {file = "exceptiongroup-1.1.2-py3-none-any.whl", hash = "sha256:e346e69d186172ca7cf029c8c1d16235aa0e04035e5750b4b95039e65204328f"},
+    {file = "exceptiongroup-1.1.2.tar.gz", hash = "sha256:12c3e887d6485d16943a309616de20ae5582633e0a2eda17f4e10fd61c1e8af5"},
 ]
 
 [package.extras]
@@ -1177,13 +1163,13 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.7.0"
+version = "6.8.0"
 description = "Read metadata from Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-6.7.0-py3-none-any.whl", hash = "sha256:cb52082e659e97afc5dac71e79de97d8681de3aa07ff18578330904a9d18e5b5"},
-    {file = "importlib_metadata-6.7.0.tar.gz", hash = "sha256:1aaf550d4f73e5d6783e7acb77aec43d49da8017410afae93822cc9cca98c4d4"},
+    {file = "importlib_metadata-6.8.0-py3-none-any.whl", hash = "sha256:3ebb78df84a805d7698245025b975d9d67053cd94c79245ba4b3eb694abe68bb"},
+    {file = "importlib_metadata-6.8.0.tar.gz", hash = "sha256:dbace7892d8c0c4ac1ad096662232f831d4e64f4c4545bd53016a3e9d4654743"},
 ]
 
 [package.dependencies]
@@ -1192,25 +1178,25 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.12.0"
+version = "6.0.0"
 description = "Read resources from Python packages"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-5.12.0-py3-none-any.whl", hash = "sha256:7b1deeebbf351c7578e09bf2f63fa2ce8b5ffec296e0d349139d43cca061a81a"},
-    {file = "importlib_resources-5.12.0.tar.gz", hash = "sha256:4be82589bf5c1d7999aedf2a45159d10cb3ca4f19b2271f8792bc8e6da7b22f6"},
+    {file = "importlib_resources-6.0.0-py3-none-any.whl", hash = "sha256:d952faee11004c045f785bb5636e8f885bed30dc3c940d5d42798a2a4541c185"},
+    {file = "importlib_resources-6.0.0.tar.gz", hash = "sha256:4cf94875a8368bd89531a756df9a9ebe1f150e0f885030b461237bc7f2d905f2"},
 ]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [[package]]
 name = "ipython"
@@ -1300,36 +1286,53 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "joblib"
-version = "1.2.0"
+version = "1.3.1"
 description = "Lightweight pipelining with Python functions"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "joblib-1.2.0-py3-none-any.whl", hash = "sha256:091138ed78f800342968c523bdde947e7a305b8594b910a0fea2ab83c3c6d385"},
-    {file = "joblib-1.2.0.tar.gz", hash = "sha256:e1cee4a79e4af22881164f218d4311f60074197fb707e082e803b61f6d137018"},
+    {file = "joblib-1.3.1-py3-none-any.whl", hash = "sha256:89cf0529520e01b3de7ac7b74a8102c90d16d54c64b5dd98cafcd14307fdf915"},
+    {file = "joblib-1.3.1.tar.gz", hash = "sha256:1f937906df65329ba98013dc9692fe22a4c5e4a648112de500508b18a21b41e3"},
 ]
 
 [[package]]
 name = "jsonschema"
-version = "4.17.3"
+version = "4.18.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.17.3-py3-none-any.whl", hash = "sha256:a870ad254da1a8ca84b6a2905cac29d265f805acc57af304784962a2aa6508f6"},
-    {file = "jsonschema-4.17.3.tar.gz", hash = "sha256:0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d"},
+    {file = "jsonschema-4.18.0-py3-none-any.whl", hash = "sha256:b508dd6142bd03f4c3670534c80af68cd7bbff9ea830b9cf2625d4a3c49ddf60"},
+    {file = "jsonschema-4.18.0.tar.gz", hash = "sha256:8caf5b57a990a98e9b39832ef3cb35c176fe331414252b6e1b26fd5866f891a4"},
 ]
 
 [package.dependencies]
-attrs = ">=17.4.0"
+attrs = ">=22.2.0"
 importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+jsonschema-specifications = ">=2023.03.6"
 pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
-pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
+referencing = ">=0.28.4"
+rpds-py = ">=0.7.1"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
 format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
+[[package]]
+name = "jsonschema-specifications"
+version = "2023.6.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema_specifications-2023.6.1-py3-none-any.whl", hash = "sha256:3d2b82663aff01815f744bb5c7887e2121a63399b49b104a3c96145474d091d7"},
+    {file = "jsonschema_specifications-2023.6.1.tar.gz", hash = "sha256:ca1c4dd059a9e7b34101cf5b3ab7ff1d18b139f35950d598d629837ef66e8f28"},
+]
+
+[package.dependencies]
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+referencing = ">=0.28.0"
+
 [[package]]
 name = "jupyter-core"
 version = "5.3.1"
@@ -1429,18 +1432,18 @@ files = [
 
 [[package]]
 name = "lazy-loader"
-version = "0.2"
+version = "0.3"
 description = "lazy_loader"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "lazy_loader-0.2-py3-none-any.whl", hash = "sha256:c35875f815c340f823ce3271ed645045397213f961b40ad0c0d395c3f5218eeb"},
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+    {file = "lazy_loader-0.3-py3-none-any.whl", hash = "sha256:1e9e76ee8631e264c62ce10006718e80b2cfc74340d17d1031e0f84af7478554"},
+    {file = "lazy_loader-0.3.tar.gz", hash = "sha256:3b68898e34f5b2a29daaaac172c6555512d0f32074f147e2254e4a6d9d838f37"},
 ]
 
 [package.extras]
-lint = ["pre-commit (>=3.1)"]
-test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
+lint = ["pre-commit (>=3.3)"]
+test = ["pytest (>=7.4)", "pytest-cov (>=4.1)"]
 
 [[package]]
 name = "markdown-it-py"
@@ -1527,52 +1530,52 @@ files = [
 
 [[package]]
 name = "matplotlib"
-version = "3.7.1"
+version = "3.7.2"
 description = "Python plotting package"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1584,7 +1587,7 @@ kiwisolver = ">=1.0.1"
 numpy = ">=1.20"
 packaging = ">=20.0"
 pillow = ">=6.2.0"
-pyparsing = ">=2.3.1"
+pyparsing = ">=2.3.1,<3.1"
 python-dateutil = ">=2.7"
 
 [[package]]
@@ -1722,39 +1725,39 @@ setuptools = "*"
 
 [[package]]
 name = "numpy"
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 description = "Fundamental package for array computing in Python"
 optional = false
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 python-versions = ">=3.8"
 files = [
-    {file = "tifffile-2023.4.12-py3-none-any.whl", hash = "sha256:3161954746fe32c4f4244d0fb2eb0a272f3a3760b78882a42faa83ac5e6e0b74"},
-    {file = "tifffile-2023.4.12.tar.gz", hash = "sha256:2fa99f9890caab919d932a0acaa9d0f5843dc2ef3594e212963932e20713badd"},
+    {file = "tifffile-2023.7.10-py3-none-any.whl", hash = "sha256:94dfdec321ace96abbfe872a66cfd824800c099a2db558443453eebc2c11b304"},
+    {file = "tifffile-2023.7.10.tar.gz", hash = "sha256:c06ec460926d16796eeee249a560bcdddf243daae36ac62af3c84a953cd60b4a"},
 ]
 
 [package.dependencies]
@@ -3281,13 +3359,13 @@ files = [
 
 [[package]]
 name = "trimesh"
-version = "3.22.1"
+version = "3.22.3"
 description = "Import, export, process, analyze and view triangular meshes."
 optional = false
 python-versions = "*"
 files = [
-    {file = "trimesh-3.22.1-py3-none-any.whl", hash = "sha256:c0334eede8958d38bd25fe144c480c7a46417535e5eb7ed60d1bd9a30bcbc596"},
-    {file = "trimesh-3.22.1.tar.gz", hash = "sha256:f40546d4214e16794802ca0a949d10cd54b1f5a630b0819afddaf4f0e16c64b2"},
+    {file = "trimesh-3.22.3-py3-none-any.whl", hash = "sha256:c571580d5457dbb3c28ebc96fbf3ec182e66779f8352eea31cc718cc1eb21a72"},
+    {file = "trimesh-3.22.3.tar.gz", hash = "sha256:3eb5ea0583841425c866c8a18489a1d6cc1b185442a324c697cd9d91f044eda5"},
 ]
 
 [package.dependencies]
@@ -3300,18 +3378,17 @@ test = ["autopep8", "coveralls", "ezdxf", "pyinstrument", "pymeshlab", "pytest",
 
 [[package]]
 name = "trio"
-version = "0.22.0"
+version = "0.22.1"
 description = "A friendly Python library for async concurrency and I/O"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "trio-0.22.0-py3-none-any.whl", hash = "sha256:f1dd0780a89bfc880c7c7994519cb53f62aacb2c25ff487001c0052bd721cdf0"},
-    {file = "trio-0.22.0.tar.gz", hash = "sha256:ce68f1c5400a47b137c5a4de72c7c901bd4e7a24fbdebfe9b41de8c6c04eaacf"},
+    {file = "trio-0.22.1-py3-none-any.whl", hash = "sha256:1270da4a4a33caf33f85c6a255f2ef5f71629a3ec9aea31a052062b673ae58d3"},
+    {file = "trio-0.22.1.tar.gz", hash = "sha256:eb5f641b313eb502a16de176d84cecd9ccf2394a7c8655d2297398376bb15eca"},
 ]
 
 [package.dependencies]
-async-generator = ">=1.9"
-attrs = ">=19.2.0"
+attrs = ">=20.1.0"
 cffi = {version = ">=1.14", markers = "os_name == \"nt\" and implementation_name != \"pypy\""}
 exceptiongroup = {version = ">=1.0.0rc9", markers = "python_version < \"3.11\""}
 idna = "*"
@@ -3337,13 +3414,13 @@ wsproto = ">=0.14"
 
 [[package]]
 name = "typing-extensions"
-version = "4.6.3"
+version = "4.7.1"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.6.3-py3-none-any.whl", hash = "sha256:88a4153d8505aabbb4e13aacb7c486c2b4a33ca3b3f807914a9b4c844c471c26"},
-    {file = "typing_extensions-4.6.3.tar.gz", hash = "sha256:d91d5919357fe7f681a9f2b5b4cb2a5f1ef0a1e9f59c4d8ff0d3491e05c0ffd5"},
+    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
+    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
 ]
 
 [[package]]
@@ -3533,20 +3610,20 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.16.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
-    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+    {file = "zipp-3.16.0-py3-none-any.whl", hash = "sha256:5dadc3ad0a1f825fe42ce1bce0f2fc5a13af2e6b2d386af5b0ff295bc0a287d3"},
+    {file = "zipp-3.16.0.tar.gz", hash = "sha256:1876cb065531855bbe83b6c489dcf69ecc28f1068d8e95959fe8bbc77774c941"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<3.11"
-content-hash = "7ad087a16221ae7dfbc030a1edc8aa6b62fce4f378b70ba968955b8b4a81a366"
+content-hash = "833f02cf8f54d749b613a82d84dde3bb603915d1a24406b4f6e8906b068e29d4"
diff --git a/pyproject.toml b/pyproject.toml
index ef18ffd3..78cc126d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,6 +54,8 @@ trimesh = "^3.22.1"
 webdataset = "^0.2.48"
 wget = "^3.2"
 selenium = "^4.10.0"
+ipython = "^8.12.0"
+pybind11 = "^2.10.4"
 
 [tool.poetry.group.dev]
 optional = true
@@ -61,9 +63,7 @@ optional = true
 [tool.poetry.group.dev.dependencies]
 black = "^23.3.0"
 coverage = {extras = ["toml"], version = "^7.2.5"}
-ipython = "^8.12.0"
 pre-commit = "^3.2.1"
-pybind11 = "^2.10.4"
 ruff = "^0.0.260"
 
 [tool.poetry.group.docs]