You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I'm trying to scaffolding a draft for which the contigN50 is 8k. It's a very fragmented draft with more than 800 million contigs in it. I ran 3d-dna with default parameters, and put the output image in the attachment. Nearly half of the draft didn't assembled.
I have checked the parameters mentioned in DNA zoo, and I know I should adjust the -i smaller, I will try to run 3d-dna with -i 5000.
Is there any other parameters I should also pay attention to for the very fragmented draft? could you give me some suggestions?
The text was updated successfully, but these errors were encountered:
Hi,
I'm trying to scaffolding a draft for which the contigN50 is 8k. It's a very fragmented draft with more than 800 million contigs in it. I ran 3d-dna with default parameters, and put the output image in the attachment. Nearly half of the draft didn't assembled.
I have checked the parameters mentioned in DNA zoo, and I know I should adjust the -i smaller, I will try to run 3d-dna with -i 5000.
Is there any other parameters I should also pay attention to for the very fragmented draft? could you give me some suggestions?
The text was updated successfully, but these errors were encountered: