You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
I got this issue when I was running juicer. Is anyone meet this error before?
Error reading datasetnull
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readFully(LittleEndianInputStream.java:138)
at htsjdk.tribble.util.LittleEndianInputStream.readLong(LittleEndianInputStream.java:80)
at htsjdk.tribble.util.LittleEndianInputStream.readDouble(LittleEndianInputStream.java:100)
at juicebox.data.DatasetReaderV2.readFooter(DatasetReaderV2.java:470)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:235)
at juicebox.tools.utils.original.NormalizationVectorUpdater.updateHicFile(NormalizationVectorUpdater.java:78)
at juicebox.tools.clt.old.AddNorm.run(AddNorm.java:84)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
real 0m8.205s
user 0m1.196s
sys 0m0.421s
/apps/juicer/scripts/common/juicer_tools is post-processing Hi-C for Vpom
Data read from /01.asm/Hic/aligned/inter_30.hic.
Motifs read from /apps/juicer/references/motif
ARROWHEAD:
Picked up _JAVA_OPTIONS: -Xmx150000m -Xms150000m
Reading file: /01.asm/Hic/aligned/inter_30.hic
Error reading datasetnull
Could not read hic file: null
***! Problem while running Arrowhead
***! Error! Either inter.hic or inter_30.hic were not created
Either inter.hic or inter_30.hic were not created. Check for results
My script is follwing:
/apps/juicer/scripts/juicer.sh -g Vpom -z /Hic/reference/Vpom.asm.hic.p_ctg.fa -p /01.asm/Hic/Vpom.chrom.sizes -s none -d /01.asm/Hic -t 96
The text was updated successfully, but these errors were encountered:
Hi,
I got this issue when I was running juicer. Is anyone meet this error before?
Error reading datasetnull
java.io.EOFException
at htsjdk.tribble.util.LittleEndianInputStream.readFully(LittleEndianInputStream.java:138)
at htsjdk.tribble.util.LittleEndianInputStream.readLong(LittleEndianInputStream.java:80)
at htsjdk.tribble.util.LittleEndianInputStream.readDouble(LittleEndianInputStream.java:100)
at juicebox.data.DatasetReaderV2.readFooter(DatasetReaderV2.java:470)
at juicebox.data.DatasetReaderV2.read(DatasetReaderV2.java:235)
at juicebox.tools.utils.original.NormalizationVectorUpdater.updateHicFile(NormalizationVectorUpdater.java:78)
at juicebox.tools.clt.old.AddNorm.run(AddNorm.java:84)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
real 0m8.205s
user 0m1.196s
sys 0m0.421s
/apps/juicer/scripts/common/juicer_tools is post-processing Hi-C for Vpom
Data read from /01.asm/Hic/aligned/inter_30.hic.
Motifs read from /apps/juicer/references/motif
ARROWHEAD:
Picked up _JAVA_OPTIONS: -Xmx150000m -Xms150000m
Reading file: /01.asm/Hic/aligned/inter_30.hic
Error reading datasetnull
Could not read hic file: null
***! Problem while running Arrowhead
***! Error! Either inter.hic or inter_30.hic were not created
Either inter.hic or inter_30.hic were not created. Check for results
My script is follwing:
/apps/juicer/scripts/juicer.sh -g Vpom -z /Hic/reference/Vpom.asm.hic.p_ctg.fa -p /01.asm/Hic/Vpom.chrom.sizes -s none -d /01.asm/Hic -t 96
The text was updated successfully, but these errors were encountered: