NAMESPACE

# Generated by roxygen2: do not edit by hand

export(assign_gainloss)
export(countInsertions)
export(dist_ad)
export(epiAneufinder)
export(generateCountMatrix)
export(getbp)
export(makeWindows)
export(plot_karyo_annotated)
export(plot_karyo_gainloss)
export(plot_single_cell_profile)
export(qc.entropy)
export(qc.sos)
export(qc.spikiness)
export(readCountMatrix)
export(seq_dist_ad)
export(splitAt)
export(split_subclones)
export(stateColors)
export(threshold_dist_values)
import(BSgenome.Hsapiens.UCSC.hg38)
import(BiocGenerics)
import(Biostrings)
import(GenomeInfoDb)
import(GenomicRanges)
import(Matrix)
import(R.utils)
import(Rsamtools)
import(S4Vectors)
import(SummarizedExperiment)
import(cowplot)
import(data.table)
import(ggdendro)
import(ggplot2)
import(gridExtra)
import(magrittr)
import(plyranges)
import(stats)
importFrom(GenomicAlignments,summarizeOverlaps)
importFrom(parallel,mclapply)