added progressbar for repack and pack_all_loose

disk_objectstore/container.py

@@ -1,6 +1,7 @@
 """
 The main implementation of the ``Container`` class of the object store.
 """
+
 # pylint: disable=too-many-lines
 import dataclasses
 import io
@@ -1319,6 +1320,7 @@ def pack_all_loose(  # pylint: disable=too-many-locals,too-many-branches,too-man
         compress: Union[bool, CompressMode] = CompressMode.NO,
         validate_objects: bool = True,
         do_fsync: bool = True,
+        callback: Optional[Callable] = None,
     ) -> None:
         """Pack all loose objects.
 
@@ -1393,6 +1395,17 @@ def pack_all_loose(  # pylint: disable=too-many-locals,too-many-branches,too-man
         # on Mac and on Windows (see issues #37 and #43). Therefore, I do NOT delete them,
         # and deletion is deferred to a manual clean-up operation.
 
+        if callback:
+            callback(
+                action="init",
+                value={
+                    "total": self.get_total_size()["total_size_loose"],
+                    "description": "Packing loose objects",
+                },
+            )
+            # I wish this would show as MB, GB. In tqdm it's easy:
+            # just pass unit='B' and unit_scale=1024. But would callback accept **keywords?
+
         # Outer loop: this is used to continue when a new pack file needs to be created
         while loose_objects:
             # Store the last pack integer ID, needed to know later if I need to open a new pack
@@ -1469,6 +1482,11 @@ def pack_all_loose(  # pylint: disable=too-many-locals,too-many-branches,too-man
                     # Appending for later bulk commit - see comments in add_streamed_objects_to_pack
                     obj_dicts.append(obj_dict)
 
+                    if callback:
+                        callback(
+                            action="update",
+                            value=obj_dict["size"],
+                        )
                 # It's now time to write to the DB, in a single bulk operation (per pack)
                 if obj_dicts:
                     # Here I shouldn't need to do `OR IGNORE` as in `add_streamed_objects_to_pack`
@@ -1504,6 +1522,8 @@ def pack_all_loose(  # pylint: disable=too-many-locals,too-many-branches,too-man
             # HOWEVER, while this would work fine on Linux, there are concurrency issues both
             # on Mac and on Windows (see issues #37 and #43). Therefore, I do NOT delete them,
             # and deletion is deferred to a manual clean-up operation.
+        if callback:
+            callback(action="close", value=None)
 
     def add_streamed_object_to_pack(  # pylint: disable=too-many-arguments
         self,
@@ -2578,7 +2598,11 @@ def delete_objects(self, hashkeys: List[str]) -> List[Union[str, Any]]:
         # was deleted) should be considered as if the object has *not* been deleted
         return list(deleted_loose.union(deleted_packed))
 
-    def repack(self, compress_mode: CompressMode = CompressMode.KEEP) -> None:
+    def repack(
+        self,
+        compress_mode: CompressMode = CompressMode.KEEP,
+        callback: Optional[Callable] = None,
+    ) -> None:
         """Perform a repack of all packed objects.
 
         At the end, it also VACUUMs the DB to reclaim unused space and make
@@ -2589,11 +2613,14 @@ def repack(self, compress_mode: CompressMode = CompressMode.KEEP) -> None:
         :param compress_mode: see docstring of ``repack_pack``.
         """
         for pack_id in self._list_packs():
-            self.repack_pack(pack_id, compress_mode=compress_mode)
+            self.repack_pack(pack_id, compress_mode=compress_mode, callback=callback)
         self._vacuum()
 
-    def repack_pack(  # pylint: disable=too-many-branches,too-many-statements
-        self, pack_id: str, compress_mode: CompressMode = CompressMode.KEEP
+    def repack_pack(  # pylint: disable=too-many-branches,too-many-statements,too-many-locals
+        self,
+        pack_id: str,
+        compress_mode: CompressMode = CompressMode.KEEP,
+        callback: Optional[Callable] = None,
     ) -> None:
         """Perform a repack of a given pack object.
 
@@ -2628,6 +2655,14 @@ def repack_pack(  # pylint: disable=too-many-branches,too-many-statements
         obj_dicts = []
         # At least one object. Let's repack. We have checked before that the
         # REPACK_PACK_ID did not exist.
+        if callback:
+            callback(
+                action="init",
+                value={
+                    "total": self.get_total_size()["total_size_packed"],
+                    "description": f"Repack {pack_id}",
+                },
+            )
         with self.lock_pack(
             str(self._REPACK_PACK_ID), allow_repack_pack=True
         ) as write_pack_handle:
@@ -2725,13 +2760,17 @@ def repack_pack(  # pylint: disable=too-many-branches,too-many-statements
                     # Appending for later bulk commit
                     # I will assume that all objects of a single pack fit in memory
                     obj_dicts.append(obj_dict)
+                    if callback:
+                        callback(action="update", value=obj_dict["size"])
+            # safe flush to disk seems to be a time consuming operation, but no easy way to include in the progress bar
             safe_flush_to_disk(
                 write_pack_handle,
                 self._get_pack_path_from_pack_id(
                     self._REPACK_PACK_ID, allow_repack_pack=True
                 ),
             )
-
+        if callback:
+            callback(action="close", value=None)
         # We are done with data transfer.
         # At this stage we just have a new pack -1 (_REPACK_PACK_ID) but it is never referenced.
         # Let us store the information in the DB.