Fix missing bottle volume in ICE2010 microplankton (set to 250 ml)

[cnrdh]

Before

$ cat ndjson/ice2010_konghau_database_complete_phytoplankton_niskin.ndjson | nd-filter 'd.cells_in_250_ml > 0' | ./iopan_protist_recalc | nd-count --select perfect,volumeRatio,quantityRatio
{"perfect":null,"volumeRatio":null,"quantityRatio":null,"count":614}

$ cat deposit/ice10_konghau_database_complete_phytoplankton_microplankton_niskin.tsv | sed 's/,/./g' | nd-csv -n | ./iopan_protist_to_dwc | nd-filter 'd.iopan?.["cells in 250 ml"]>0' | ./iopan_protist_recalc | nd-count --select perfect,volumeRatio
{"perfect":false,"volumeRatio":1,"count":614}

2 quantity ratio buckets:

{"perfect":false,"volumeRatio":1,"quantityRatio":510000,"count":178}
{"perfect":false,"volumeRatio":1,"quantityRatio":130,"count":436}

[cnrdh]

See also npolar/marine-db#51 (comment) … – 8 of uniq 138 samples are not in sample log. Only 18 microplankton, but in the data there are 32:

$cat deposit/ice10_konghau_database_complete_phytoplankton_microplankton_niskin.tsv | sed 's/,/./g' | nd-csv -n | ./iopan_protist_to_dwc | nd-filter 'd.iopan?.["cells in 250 ml"]>0' | nd-uniq --select fieldNumber | nd-group 1 | nd-map 'd[1].map(({fieldNumber})=>fieldNumber)'
[20,35,36,38,83,84,113,133,134,135,136,179,180,181,182,227,228,229,230,272,273,318,361,405,427,579,580,581,582,654,669,670]

[cnrdh]

After:

$ cat deposit/ice10_konghau_database_complete_phytoplankton_microplankton_niskin.tsv | sed 's/,/./g' | nd-csv -n | ./iopan_protist_to_dwc | nd-filter 'd.iopan?.["cells in 250 ml"]>0' | ./fix/fix_ice2010 | ./iopan_protist_recalc | nd-count --select perfect
{"perfect":true,"count":614}

All

$ cat deposit/ice10_konghau_database_complete_phytoplankton_microplankton_niskin.tsv | sed 's/,/./g' | nd-csv -n | ./iopan_protist_to_dwc | ./fix/fix_ice2010 | ./iopan_protist_recalc | nd-count --select perfect
{"perfect":true,"count":3443}