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Achievements

Achievement: QuickdrawAchievement: Public SponsorAchievement: Pair Extraordinairex3Achievement: YOLOAchievement: StarstruckAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

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  • napari-tomoslice Public

    tomogram visualisation and annotation in napari

    Python 2 1 BSD 3-Clause "New" or "Revised" License Updated Mar 4, 2025

  • napari Public

    Forked from napari/napari

    napari: a fast, interactive, multi-dimensional image viewer for python

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 27, 2024

  • ttctf Public

    Spatially and temporally resolved CTF estimation for cryo-EM images.

    Python 2 1 BSD 3-Clause "New" or "Revised" License Updated Sep 10, 2024

  • ttmotion Public

    Inter-frame motion estimation and correction for cryo-EM images.

    Python 2 1 BSD 3-Clause "New" or "Revised" License Updated Aug 7, 2024

  • bluesquare Public

    HTML Updated Aug 4, 2024

  • alisterburt.github.io Public

    personal website

    MIT License Updated Aug 3, 2024

  • molstar-embed-simple Public

    testing building an embeddable viewer with molstar

    TypeScript Updated Jun 27, 2024

  • molstar-multi-volume-grid Public

    A web-based tiled volume viewer built on mol*

    TypeScript Updated Jun 25, 2024

  • napari-mrcfile-reader Public

    Read MRC format image files into napari using the mrcfile package from CCP-EM

    Python 18 6 BSD 3-Clause "New" or "Revised" License Updated May 17, 2024

  • molstar-linked-orthoslice Public

    A linked orthoslice viewer in Mol*

    TypeScript Updated May 4, 2024

  • pydev-guide.github.io Public

    Forked from pydev-guide/pydev-guide.github.io

    Guide to python package development for scientists

    Updated Mar 12, 2024

  • staged-recipes Public

    Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 19, 2024

  • mmdf Public

    Forked from teamtomo/mmdf

    macromolecular structures as pandas DataFrames

    Python BSD 3-Clause "New" or "Revised" License Updated Jan 20, 2024

  • DynaMight Public

    Forked from 3dem/DynaMight

    Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset

    Python 1 Other Updated Nov 14, 2023

  • lnl-scripts Public

    Forked from loopandlearn/lnl-scripts

    New home for Loop and Learn scripts

    Shell Updated Sep 19, 2023

  • dynamo2m Public

    a bidirectional interface between Dynamo and the Warp-RELION-M pipeline

    Python 16 5 BSD 3-Clause "New" or "Revised" License Updated Jul 28, 2023

  • ETSegTools Public

    Forked from bbarad/ETSegTools

    Operations on Quantized or Binary CryoET Segmentations

    Python Other Updated May 17, 2023

  • microvis Public

    Forked from tlambert03/microvis
    Python Other Updated Apr 15, 2023

  • tilt-image-excluder Public

    QWidget for napari that enables excluding tilt-images from a tilt-series

    Python 1 BSD 3-Clause "New" or "Revised" License Updated Mar 3, 2023

  • mdocspoofer Public

    spoof mdoc files from tomo5 frames directories

    Python 11 BSD 3-Clause "New" or "Revised" License Updated Nov 9, 2022

  • tomo_preprocessing Public archive

    Python 3 1 Other Updated Jul 21, 2022

  • napari-workshops Public

    A JupyterBook site for napari workshop materials

    Jupyter Notebook 11 2 BSD 3-Clause "New" or "Revised" License Updated Jul 11, 2022

  • alisterburt Public

    Updated Jun 22, 2022

  • napari-cryo-et-demo Public

    Using napari to visualise cryo-electron tomography data programmatically

    Python 3 BSD 3-Clause "New" or "Revised" License Updated Apr 29, 2022

  • I2K2022-napari-workshop Public

    Forked from haesleinhuepf/I2K2022-napari-workshop
    Creative Commons Attribution 4.0 International Updated Apr 27, 2022

  • eulerangles Public

    simplify the handling of large sets of Euler angles in Python

    Python 33 5 BSD 3-Clause "New" or "Revised" License Updated Feb 1, 2022

  • tiler Public

    Forked from the-lay/tiler

    N-dimensional NumPy array tiling and merging with overlapping, padding and tapering

    Python MIT License Updated Jan 19, 2022

  • LibreTransmitter Public

    Forked from dabear/LibreTransmitter
    Swift MIT License Updated Nov 25, 2021

  • napari-subboxer Public

    Python 3 2 BSD 3-Clause "New" or "Revised" License Updated Nov 24, 2021

  • warp2isonet Public

    prepare ISONET training data from a warp project directory

    Python 3 Other Updated Nov 15, 2021