Bd_NV_PA

R code for analyses for paper describing Bd genotypes in PA and NV

For analysis using ambiguities sequences to create trees using Astral see the file ambig_for_trees.md

For analysis using filtered SNPS and associated figures see the file snp_analysis_nv_pa.md

Paper can be found here: https://doi.org/10.1371/journal.pone.0261047