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CMakeLists.txt
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CMAKE_MINIMUM_REQUIRED(VERSION 3.10.2)
project(oneMD DESCRIPTION "Data-parallel molecular dynamics simulator for Intel oneAPI." LANGUAGES CXX C)
if(DEFINED ENV{ONEAPI_ROOT})
set(USE_ONEAPI ON)
else()
set(USE_ONEAPI OFF)
endif()
if (CMAKE_CXX_COMPILER_ID STREQUAL "Clang")
set(CLANG ON)
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
set(GCC ON)
endif()
if (USE_ONEAPI)
message(STATUS "Using Intel oneAPI environment at $ENV{ONEAPI_ROOT}.")
if(WIN32)
set(CMAKE_CXX_COMPILER "dpcpp-cl")
else()
set(CMAKE_CXX_COMPILER "dpcpp")
endif()
else()
message(WARNING "Not using Intel oneAPI. Only standard C++ features and libraries like OpenMP will be available.")
find_package(OpenMP REQUIRED)
endif()
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_C_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS 1)
find_package (Threads REQUIRED)
find_package(Boost)
set (SPDLOG_SRC
ext/spdlog/src/async.cpp
ext/spdlog/src/cfg.cpp
ext/spdlog/src/color_sinks.cpp
ext/spdlog/src/file_sinks.cpp
ext/spdlog/src/fmt.cpp
ext/spdlog/src/spdlog.cpp
ext/spdlog/src/stdout_sinks.cpp
)
add_library (spdlog STATIC ${SPDLOG_SRC})
target_include_directories(spdlog PRIVATE ext/spdlog/include)
target_compile_definitions(spdlog PRIVATE SPDLOG_COMPILED_LIB=1)
set (FIGLET_SRC
ext/embedFiglet/src/Figlet.cc
ext/embedFiglet/src/Figlet_Font_standard.cc
ext/embedFiglet/src/Figlet_Font_small.cc
)
set (XDRFILE_SRC
ext/libxdrfile/src/trr_seek.c
ext/libxdrfile/src/xtc_seek.c
ext/libxdrfile/src/xdrfile_trr.c
ext/libxdrfile/src/xdrfile_xtc.c
ext/libxdrfile/src/xdrfile.c
)
add_library (xdrfile STATIC ${XDRFILE_SRC} )
target_include_directories(xdrfile PRIVATE
ext/libxdrfile/include
)
if(MSVC)
target_compile_definitions(xdrfile PRIVATE
ftello=_ftelli64
fseeko=_fseeki64
off_t=long
)
endif()
set (INIH_SRC ext/inih/ini.c)
add_library (inih STATIC ${INIH_SRC})
target_include_directories(inih PRIVATE ext/inih)
set (SIMS_SRC src/simulators/JB.cpp src/simulators/LJ.cpp)
set (SRC
ext/inih/cpp/INIReader.cpp
src/Exceptions.cpp
src/Simulator.cpp
src/Vec3.cpp
src/CubicBox.cpp
src/NeighborList.cpp
src/PdbFile.cpp
src/Rdf.cpp
src/ThermodynamicVariable.cpp
src/Thermostat.cpp
src/Velocity.cpp
${SIMS_SRC}
src/main.cpp
)
if (CMAKE_BUILD_TYPE MATCHES Debug)
set(TGT omdd)
if (MSVC)
set(BIN Debug/${TGT}.exe)
set(BIN_OUT ${TGT}.exe)
else()
set (BIN ${TGT})
set(BIN_OUT ${TGT})
endif()
else ()
set(TGT omd)
if (MSVC)
set(BIN Release/${TGT}.exe)
set(BIN_OUT ${TGT}.exe)
else()
set (BIN ${TGT})
set(BIN_OUT ${TGT})
endif()
endif()
add_executable(${TGT} ${FIGLET_SRC} ${SRC})
target_compile_features(${TGT} PRIVATE cxx_std_17)
target_compile_features(${TGT} PRIVATE c_std_11)
#target_compile_options(${TGT} PRIVATE "-fsycl-device-lib=all")
#set_source_files_properties(common.hh PROPERTIES COMPILE_OPTIONS "-fsycl-device-lib=all")
if (MSVC)
target_compile_definitions(${TGT} PRIVATE MSVC = 1)
target_compile_features(${TGT} PRIVATE cxx_std_20)
target_compile_definitions(${TGT} PRIVATE _USE_MATH_DEFINES = 1)
#elseif(GCC)
# target_compile_options(${TGT} PRIVATE "-std=gnu++17")
endif()
target_include_directories(${TGT} PRIVATE
ext/embedFiglet/src
ext/spdlog/include
ext/tclap-1.2.3/include
ext/libxdrfile/include
ext/inih
ext/inih/cpp
src
/opt/intel/oneapi/compiler/latest/linux/include/sycl
)
target_link_libraries(${TGT} PUBLIC
${CMAKE_THREAD_LIBS_INIT}
spdlog
xdrfile
inih
)
if (USE_ONEAPI)
target_compile_definitions(${TGT} PRIVATE USE_ONEAPI=1)
target_link_libraries(${TGT} PRIVATE tbb_debug)
else()
target_link_libraries(${TGT} PRIVATE OpenMP::OpenMP_CXX)
endif()
add_custom_command(
TARGET ${TGT} POST_BUILD
COMMAND ${CMAKE_COMMAND} -E copy
${CMAKE_CURRENT_BINARY_DIR}/${BIN}
${CMAKE_SOURCE_DIR}/${BIN_OUT}
)
add_executable(jb_test ext/test_sims/jb_test.cpp)
if (Boost_FOUND)
add_executable(ljmd_test
ext/test_sims/wblennardjones/src/coordinates.cpp
ext/test_sims/wblennardjones/src/main.cpp
ext/test_sims/wblennardjones/src/NeighborList.cpp
ext/test_sims/wblennardjones/src/PdbFile.cpp
ext/test_sims/wblennardjones/src/Rdf.cpp
ext/test_sims/wblennardjones/src/ThermodynamicVariable.cpp
ext/test_sims/wblennardjones/src/Thermostat.cpp
ext/test_sims/wblennardjones/src/cubicbox.cpp
ext/test_sims/wblennardjones/src/utils.cpp
ext/test_sims/wblennardjones/src/Velocity.cpp
)
target_include_directories(ljmd_test PRIVATE
${BOOST_INCLUDES}
ext/libxdrfile/include
ext/test_sims/wblennardjones/include
)
target_link_libraries(ljmd_test PRIVATE
${LIBBBOOST}
xdrfile
)
if (!USE_ONEAPI)
target_link_libraries(ljmd_test PRIVATE OpenMP::OpenMP_CXX)
endif()
else()
message(WARNING "Not building ljmd test sim since Boost was not found.")
endif()
message(STATUS "C++ compiler = ${CMAKE_CXX_COMPILER_ID} ${CMAKE_CXX_COMPILER}" )
message(STATUS "CMAKE_CXX_FLAGS_RELEASE = ${CMAKE_CXX_FLAGS_RELEASE}" )
message(STATUS "CMAKE_CXX_FLAGS_DEBUG = ${CMAKE_CXX_FLAGS_DEBUG}" )
message(STATUS "CMAKE_SYSTEM_NAME = ${CMAKE_SYSTEM_NAME}" )
message(STATUS "CMAKE_SYSTEM_PROCESSOR = ${CMAKE_SYSTEM_PROCESSOR}" )
if(APPLE)
message(STATUS "CMAKE_OSX_SYSROOT = ${CMAKE_OSX_SYSROOT}" )
message(STATUS "CMAKE_OSX_ARCHITECTURES = ${CMAKE_OSX_ARCHITECTURES}" )
message(STATUS "CMAKE_OSX_DEPLOYMENT_TARGET= ${CMAKE_OSX_DEPLOYMENT_TARGET}" )
endif()