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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.poetry]
name = "taxmyphage"
description = "Script to assign taxonomy to a bacteriophage at the genus and species level"
version = "0.2.dev0"
authors = [
"Andrew Millard <[email protected]>",
"Thomas Sicheritz-Ponten <[email protected]>",
"Remi Denise"
]
readme = "README.md"
homepage = "https://github.com/amillard/tax_myPHAGE"
repository = "https://github.com/amillard/tax_myPHAGE"
keywords = ["Phage", "Scientific/Engineering", "Bio-Informatics", "Taxonomy", "Bacteriophage"]
license = "MIT"
classifiers = [
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: POSIX",
"Environment :: Console",
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
# If your project structure differs from the standard one supported by poetry,
# you can specify the packages you want to include in the final distribution.
packages = [
{include = "taxmyphage"}
]
include = [
"CONTRIBUTORS.md",
]
exclude = [
".git*",
"*.pyc",
"*__pycache__*",
"upload*",
"test*",
"conda*",
"Benchmark*",
".coverage*",
"maybe*",
"*old*",
"*data*",
".DS_Store",
"taxmyphage/bin*",
]
[tool.poetry.dependencies]
python = ">=3.9,<3.13"
biopython = "^1.81"
pandas = "^2.1.1"
numpy = "^1.26.0"
matplotlib = "^3.8.0"
seaborn = "^0.13"
wget = "^3.2"
scipy = "^1.11.3"
tqdm = "^4.66.1"
openpyxl = "^3.1.2"
networkx = "^3.1"
icecream = "^2.1.3"
zipp = "^3.17.0"
[tool.poetry.group.test.dependencies]
pytest = "^6.2.5"
pytest-runner = "^5.3.1"
[tool.poetry.scripts]
taxmyphage = 'taxmyphage.__main__:main'
[tool.poetry.urls]
"Bug Tracker" = "https://github.com/amillard/taxy_myPHAGE/issues"
[tool.pytest.ini_options]
norecursedirs = [".*", "*.egg*", "build", "dist", "conda.recipe"]
addopts = """
--tb native
--strict-markers
--durations=20"""
markers = ["serial: execute test serially (to avoid race conditions)"]
[tool.distutils.bdist_wheel]
universal = 1