pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "pyhpo"
description = "A Python package to work with the HPO Ontology"
readme = "README.rst"
requires-python = ">=3.7"
classifiers = [
    "Programming Language :: Python :: Implementation :: CPython",
    "Programming Language :: Python :: Implementation :: PyPy",
    "Intended Audience :: Developers",
    "Intended Audience :: Healthcare Industry",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Software Development :: Libraries :: Python Modules"
]
license = {text = "MIT"}
authors = [
    {name = "Jonas Marcello", email = "jonas.marcello@esbme.com"}
]
keywords = [
    "hpo", "phenotype", "genotype", "bioinformatics", "rare diseases"
]
dependencies = [
    "pydantic >= 2",
    "backports.cached-property == 1.0.1",
]
dynamic = ["version"]

[tool.setuptools]
packages = ["pyhpo", "pyhpo.parser", "pyhpo.similarity"]
include-package-data = true


[project.optional-dependencies]
pandas = ["pandas"]
scipy = ["scipy"]
all = ["pandas", "scipy"]
dev = [
    "pydantic >= 2",
    "backports.cached-property == 1.0.1",
    "sphinx == 6.2.1",
    "sphinx_rtd_theme",
    "sphinx_autodoc_typehints",
    "coverage",
    "black",
    "ruff",
    "mypy",
    "pandas",
    "scipy"
]

[project.urls]
Homepage = "https://github.com/anergictcell/pyhpo"
Repository = "https://github.com/anergictcell/pyhpo"
"Bug Tracker" = "https://github.com/anergictcell/pyhpo/issues"
Documentation = "https://pyhpo.readthedocs.io/"

[tool.setuptools.dynamic]
version = {attr = "pyhpo.__version__"}

[tool.ruff]
line-length = 100

[tool.ruff.lint.mccabe]
max-complexity = 10

[tool.black]
target-version = ["py37", "py38", "py39", "py310"]