DESCRIPTION

Package: chromium
Title: Analyze and visualize high throughput chromatin interaction data, such as Hi-C or ChIA-PET
Version: 0.0.0.9000
Authors@R: c(person("Annika", "Gable", email = "annikagable@gmail.com", role = c("aut", "cre")),
    person("Aleksandra", "Pekowska", email= "ola.b.pekowska@gmail.com", role = c("aut")),
    person("Bernd", "Klaus", email= "bernd.klaus@embl.de", role = "aut"),
    person("Wolfgang", "Huber", email= "wolfgang.huber@embl.de", role = "aut"),
    person("Florian", "Hahne", email= "florian.hahne@novartis.com", role = "aut"))
Description: Bin, normalize, and visualize genomic interaction data, and identify significant interactions. We are
    using sparse matrices or the InteractionSet classes to represent and manipulate interaction data.
Depends:
    R (>= 3.3.0)
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Imports: Matrix,
    smoothmest,
    ggplot2,
    rtracklayer,
    Gviz,
    GenomicRanges,
    InteractionSet,
    plyr,
    EBImage,
    IRanges,
    S4Vectors,
    SummarizedExperiment,
    biomaRt,
    methods,
    stats,
    utils,
    purrr,
    dplyr,
    psych,
    BiocParallel
Suggests: knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr