feat: Change to a cli package. (#7)

.github/CODEOWNERS

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+# These owners will be the default owners for everything in the repo.
+*       @cofiem

.github/ISSUE_TEMPLATE/bug-report.yml

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+name: Bug Report
+description: Create a report to help us improve
+title: "[Bug]: "
+labels:
+  - bug
+assignees:
+  - cofiem
+body:
+  - type: textarea
+    id: description
+    attributes:
+      label: Describe the problem
+      description: A summary of the problem you've seen.
+      placeholder: Tell us what you see!
+      value: "e.g. When the program is given these arguments, it does this action I don't want ..."
+    validations:
+      required: true
+  - type: textarea
+    id: reproduce
+    attributes:
+      label: Steps to reproduce the behavior
+      description: Your step-by-step guide to help use reproduce the problem.
+      placeholder: Tell us what you see!
+      value: "e.g. Run using these arguments ...  Look in at the output in this folder ..."
+    validations:
+      required: true
+  - type: textarea
+    id: expected
+    attributes:
+      label: Expected behavior
+      description: What do you expect to happen?
+      placeholder: Tell us what you want to see!
+      value: "e.g. Run using these arguments ...  should do this ..."
+    validations:
+      required: true
+  - type: input
+    id: program-details
+    attributes:
+      label: Program Details
+      description: What operating system and what version of the program is being used?
+      placeholder: "e.g. OS: [e.g. iOS], Program version [e.g. 2.1]"
+    validations:
+      required: false
+  - type: markdown
+    attributes:
+      value: |
+        Please attach any screenshots or logging output to help explain your problem.
+        Thanks for taking the time to fill out this bug report!

.github/ISSUE_TEMPLATE/feature-request.yml

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+name: Feature Request
+description: Suggest an idea for this project
+title: "[Feature]: "
+labels:
+  - enhancement
+assignees:
+  - cofiem
+body:
+  - type: textarea
+    id: description
+    attributes:
+      label: Describe the feature
+      description: A summary of the new functionality you'd like
+      placeholder: Tell us what you want to see!
+      value: "e.g. It would be nice to be able to do this and get this output ..."
+    validations:
+      required: true
+  - type: textarea
+    id: alternative
+    attributes:
+      label: Are there other approaches?
+      description: Any alternative solutions or features you've considered
+      placeholder: Tell us what else could be done
+      value: "e.g. Your program could interact with this other program like this ..."
+    validations:
+      required: true
+  - type: markdown
+    attributes:
+      value: |
+        Please attach any screenshots or other files  to help explain your feature.
+        Thanks for taking the time to fill out this feature request!

.github/dependabot.yml

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+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    target-branch: "main"
+    open-pull-requests-limit: 3
+
+  # Maintain dependencies for pip packages
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+    target-branch: "main"
+    commit-message:
+      prefix: "pip stable"
+      prefix-development: "pip dev"
+    open-pull-requests-limit: 3

.github/labeler.yml

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+documentation:
+  - docs/**/*
+
+dependencies:
+  - requirements.txt
+  - requirements-dev.txt
+  - pyproject.toml
+  - MANIFEST.in
+
+tests:
+  - tests/**/*

.github/release.yml

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+# Automatically generate release notes
+# .github/release.yml
+# see https://docs.github.com/en/repositories/releasing-projects-on-github/automatically-generated-release-notes#configuring-automatically-generated-release-notes
+
+changelog:
+  categories:
+    - title: New Features
+      labels:
+        - enhancement
+    - title: Bug Fixes
+      labels:
+        - bug
+    - title: Documentation changes
+      labels:
+        - documentation
+    - title: Dependency updates
+      labels:
+        - dependencies

.github/workflows/code-analysis.yml

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+name: Code Analysis
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    branches: [ "main" ]
+  schedule:
+    - cron: '40 0 * * 1'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  analyze:
+    name: Analyze
+    runs-on: ubuntu-latest
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ "python" ]
+        python-version: [ "3.7", "3.8", "3.9", "3.10", "3.11.0-rc.1" ]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v3
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: pip
+
+      - name: Install dependencies
+        run: |
+          echo "::group::Pip dependencies"
+          python -m pip install --upgrade pip setuptools wheel
+          python -m pip install --upgrade -r requirements-dev.txt -r requirements.txt
+          echo "::endgroup::"
+
+      - name: Initialize CodeQL
+        uses: github/codeql-action/init@v2
+        with:
+          languages: ${{ matrix.language }}
+          setup-python-dependencies: false
+
+      - name: Perform CodeQL Analysis
+        uses: github/codeql-action/analyze@v2
+
+      - name: Install snyk to check for vulnerabilities
+        uses: snyk/actions/setup@master
+
+      - name: Run Snyk over the runtime dependencies
+        run: snyk test --sarif-file-output=snyk-requirements-${{ matrix.language }}.sarif --command=python --file=requirements.txt --package-manager=pip --skip-unresolved
+        continue-on-error: true
+        env:
+          SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+
+      - name: Upload Snyk runtime dependencies scan result to GitHub Code Scanning
+        uses: github/codeql-action/upload-sarif@v2
+        with:
+          sarif_file: snyk-requirements-${{ matrix.language }}.sarif
+          category: requirements-runtime-${{ matrix.language }}
+
+      - name: Run Snyk over the development dependencies
+        run: snyk test --sarif-file-output=snyk-requirements-dev-${{ matrix.language }}.sarif --command=python --file=requirements-dev.txt --package-manager=pip --skip-unresolved
+        continue-on-error: true
+        env:
+          SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
+
+      - name: Upload Snyk development dependencies scan result to GitHub Code Scanning
+        uses: github/codeql-action/upload-sarif@v2
+        with:
+          sarif_file: snyk-requirements-dev-${{ matrix.language }}.sarif
+          category: requirements-dev-${{ matrix.language }}