_pkgdown.yml

destination: ../docs/ggpmisc
url: https://docs.r4photobiology.info/ggpmisc/

template:
  bootstrap: 5

reference:
  - title: Package overview
    contents:
    - '`ggpmisc-package`'
  - title: Scales
    desc: Scales control de mapping of data to aesthetics.
    contents:
    - scale_x_logFC
    - scale_colour_logFC
    - FC_format
    - FC_name
    - scale_y_Pvalue
    - scale_colour_outcome
    - scale_shape_outcome
    - outcome2factor
    - xy_outcomes2factor
    - symmetric_limits
  - title: Statistics
    desc: It is often useful to summarize data before plotting, and that is what these transformations do.
    contents:
    - stat_peaks
    - stat_poly_line
    - stat_poly_eq
    - stat_ma_line
    - stat_ma_eq
    - stat_quant_line
    - stat_quant_band
    - stat_quant_eq
    - stat_correlation
    - stat_fit_tb
    - stat_fit_tidy
    - stat_fit_glance
    - stat_fit_augment
    - stat_fit_deviations
    - stat_fit_residuals
    - stat_multcomp
    - use_label
  - title: Utilities
    desc: Low level functions used to build some of the functions above, but possibly useful also in other contexts.
    contents:
    - sprintf_dm
    - plain_label
    - coefs2poly_eq
    - poly2character
    - typeset_numbers
    - find_peaks
    - coef.lmodel2
    - confint.lmodel2
    - predict.lmodel2
    - check_poly_formula
    - keep_tidy
    - swap_xy
  - title: Changes
    desc: List of geometries, statistics and functions moved to package 'gginnards'.
    contents:
    - Moved

navbar:
  structure:
    left:  [intro, reference, articles, tutorials, news]
    right: [search, github]
  components:
    intro:
      icon: fas fa-home fa-lg
      href: index.html
      aria-label: Home
    reference:
      text: Reference
      href: reference/index.html
    news:
      text: Changelog
      href: news/index.html
    github:
      icon: fab fa-github fa-lg
      href: https://github.com/aphalo/ggpmisc/
      aria-label: GitHub
    articles:
      text: User Guide
      menu:
      - text: 'Fitted-model-based Annotations'
        href: articles/model-based-annotations.html
    tutorials:
      text: Resources
      menu:
      - text: Book 'Learn R - As a Language'
        href: https://www.learnr-book.info/
      - text: Blog on R by Pedro J. Aphalo
        href: https://www.r4photobiology.info/
      - text: ------
      - text: Package 'ggpp'
        href: https://docs.r4photobiology.info/ggpp/
      - text: Package 'gginnards'
        href: https://docs.r4photobiology.info/gginnards/
      - text: Resources about 'ggplot2'
        href: https://ggplot2.tidyverse.org/
      - text: Other 'ggplot2' extensions
        href: https://exts.ggplot2.tidyverse.org/