MarFERReT protein sequence reference library change log
v1.1.1
Improvements to MarFERReT assembly scripts
- Incorporated inclusion/exclusion flag into build procedure to integrate QC process
- Added check to see if translated protein sequence already exists
- Changed scripts to pull database version from input metadata file
- Streamlined the internal file naming process
- Important output files are now generated with the same version ID as the input metadata.csv
- The /data/source_seqs/ directory for input source sequences is now pre-generated
Added test data set and demo tutorial
- Added a small data set to test the MarFERRet build process under /versions/v1_demo/
- Seven-entry metadata.csv file (MarFERReT.v1_demo.metadata.csv)
- Compressed tarball with small set of FASTA sequences (demo_mini_entries.tar.gz)
- Demo tutorial script (marferret.v1_demo.tutorial.sh)
Zenodo repository release
- Input metadata files and output files generated by the assemble_marferret.sh, pfam_annotate.sh, and build_diamond_db.sh MarFERReT build scripts have been deposited in a Zenodo repository linked to the v1.1.1 codebase: https://doi.org/10.5281/zenodo.10553848