Merge pull request #2 from Aratz/novaseqX_update_from_gitlab

Novaseq x update from gitlab
arteria-project · Jul 13, 2023 · 6862d47 · 6862d47
2 parents 40e6c27 + cc48acd
commit 6862d47
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Showing 3 changed files with 3 additions and 5 deletions.
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -45,9 +45,7 @@ before_script:
 test:
   stage: test
   script:
-    - python setup.py test
-    - pip install tox pylint
-    - tox -e py37,pylint
+    - pytest tests/
 
 build:
   stage: build

diff --git a/requirements/dev b/requirements/dev
@@ -4,7 +4,7 @@ bumpversion==0.5.3
 flake8==3.5.0
 tox==3.26.0
 coverage==4.5.1
-Sphinx==1.8.1
+Sphinx==5.3.0
 twine==1.12.1
 
 pytest==3.8.2

diff --git a/seqreports b/seqreports
+1 −1		README.md
+12 −5		bin/get_metadata.py
+1 −1		config/nextflow_config/singularity.config
+1 −1		nextflow.config
+2 −2		requirements-dev.txt
+66 −0		test_data/20230125_lh00103_0036_A222VGWLT3/RunParameters.xml
+25 −0		tests/unit_tests/test_get_metadata.py