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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(DualSimplexSolver)
export(add_basis_samples)
export(add_default_anno)
export(add_list_markers)
export(add_noise)
export(add_pure_samples)
export(add_solution)
export(add_solution_history)
export(apply_default_filters)
export(bool_filter)
export(cat_markers)
export(coerce_pred_true_basis)
export(coerce_pred_true_props)
export(concat_data)
export(convert_sc_markers)
export(create_simulation)
export(describe_cat_features)
export(efficient_sinkhorn)
export(efficient_svd_project)
export(filter_str)
export(getNonnegativeLowRankApproximationWithGN)
export(getNonnegativeLowRankApproximationWithHMT)
export(getNonnegativeLowRankApproximationWithSVD)
export(getNonnegativeLowRankApproximationWithTangentMethod)
export(get_2d_subset)
export(get_Dwh_from_XOmega)
export(get_anno)
export(get_fold_change)
export(get_signature_markers)
export(get_solution_history)
export(guess_order)
export(initialize_solution)
export(is_logscale)
export(linearize_dataset)
export(log_dataset)
export(n_sigma_filter)
export(names_filter)
export(nnls_C__)
export(optim_config)
export(optimize_solution)
export(plot_basis_distribution)
export(plot_errors)
export(plot_feature)
export(plot_feature_pair)
export(plot_marker_enrichment)
export(plot_negative_basis_change)
export(plot_negative_proportions_change)
export(plot_numeric_features)
export(plot_projection_points)
export(plot_proportions_distribution)
export(plot_ptb_scatter)
export(plot_ptp_lines)
export(plot_ptp_scatter)
export(plot_solution_history_anim)
export(plot_svd_ds_matrix)
export(predicate_filter)
export(quantile_filter)
export(read_gene_list)
export(remove_zero_cols)
export(remove_zero_rows)
export(replace_duplicate_genes)
export(reverse_sinkhorn)
export(reverse_sinkhorn_c)
export(reverse_solution_projection)
export(reverse_solution_sinkhorn)
export(reverse_svd_projection)
export(revert_marker_list)
export(set_anno)
export(set_solution_from_x)
export(sinkhorn_scale)
export(sinkhorn_scale_c)
export(sinkhorn_sweep_c)
export(svd_project)
export(threshold_filter)
export(top_filter)
export(transform_proj_umap)
export(which_marker)
import(Matrix)
import(RColorBrewer)
import(Rcpp)
import(RcppArmadillo)
import(combinat)
import(cowplot)
import(dplyr)
import(ggplot2)
import(irlba)
import(knitr)
import(linseed)
import(reshape2)
import(scales)
import(stringr)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,exprs)
importFrom(Hmisc,describe)
importFrom(Metrics,rmse)
importFrom(R6,R6Class)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,adjustcolor)
importFrom(grid,textGrob)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(matrixStats,colMads)
importFrom(matrixStats,colMeans2)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,colSds)
importFrom(matrixStats,rowMads)
importFrom(matrixStats,rowMeans2)
importFrom(matrixStats,rowMedians)
importFrom(matrixStats,rowSds)
importFrom(rlang,parse_expr)
importFrom(tidyr,pivot_longer)
useDynLib(DualSimplex)