Chapter 10 ML Algorithm performance metrics.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Classification accuracy"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.773427887901572 0.053374577417422145\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    }
   ],
   "source": [
    "from pandas import read_csv\n",
    "from sklearn.model_selection import KFold\n",
    "from sklearn.model_selection import cross_val_score\n",
    "from sklearn.linear_model import LogisticRegression\n",
    "filename = 'pima-indians-diabetes.data.csv'\n",
    "names = ['preg','plas','pres','skin','test','mass','pedi','age','class']\n",
    "dataframe = read_csv(filename, names = names)\n",
    "array = dataframe.values\n",
    "X = array[:,0:8]\n",
    "Y= array[:,8]\n",
    "kfold = KFold(n_splits=10, random_state=7)\n",
    "model = LogisticRegression()\n",
    "scoring = 'accuracy'\n",
    "results = cross_val_score(model, X,Y, cv= kfold, scoring = scoring)\n",
    "print(results.mean(),results.std())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Logarithmic loss"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "-0.4863982520895811 0.06417239569054956\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    }
   ],
   "source": [
    "scoring = 'neg_log_loss'\n",
    "results = cross_val_score(model,X,Y, cv = kfold, scoring = scoring)\n",
    "print(results.mean(), results.std())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# AUC"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n",
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.8257157487606636 0.04325554831468048\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    }
   ],
   "source": [
    "scoring = 'roc_auc'\n",
    "results = cross_val_score(model, X,Y, cv = kfold, scoring = scoring)\n",
    "print(results.mean(), results.std())"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Confusion matrix"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[[142  20]\n",
      " [ 34  58]]\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/linear_model/_logistic.py:940: ConvergenceWarning: lbfgs failed to converge (status=1):\n",
      "STOP: TOTAL NO. of ITERATIONS REACHED LIMIT.\n",
      "\n",
      "Increase the number of iterations (max_iter) or scale the data as shown in:\n",
      "    https://scikit-learn.org/stable/modules/preprocessing.html\n",
      "Please also refer to the documentation for alternative solver options:\n",
      "    https://scikit-learn.org/stable/modules/linear_model.html#logistic-regression\n",
      "  extra_warning_msg=_LOGISTIC_SOLVER_CONVERGENCE_MSG)\n"
     ]
    }
   ],
   "source": [
    "seed = 7\n",
    "from sklearn.model_selection import train_test_split\n",
    "from sklearn.metrics import confusion_matrix\n",
    "test_size = 0.33\n",
    "X_train, X_test, Y_train, Y_test = train_test_split(X,Y,test_size=test_size, random_state = seed)\n",
    "model.fit(X_train,Y_train)\n",
    "predicted = model.predict(X_test)\n",
    "matrix = confusion_matrix(Y_test,predicted)\n",
    "print(matrix)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Classification report"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "              precision    recall  f1-score   support\n",
      "\n",
      "         0.0       0.81      0.88      0.84       162\n",
      "         1.0       0.74      0.63      0.68        92\n",
      "\n",
      "    accuracy                           0.79       254\n",
      "   macro avg       0.78      0.75      0.76       254\n",
      "weighted avg       0.78      0.79      0.78       254\n",
      "\n"
     ]
    }
   ],
   "source": [
    "from sklearn.metrics import classification_report\n",
    "report = classification_report(Y_test,predicted)\n",
    "print(report)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Mean absolute error"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 62,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "-52602.910607573096 8572.221360422374\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/home/arvind/.local/lib/python3.6/site-packages/sklearn/model_selection/_split.py:296: FutureWarning: Setting a random_state has no effect since shuffle is False. This will raise an error in 0.24. You should leave random_state to its default (None), or set shuffle=True.\n",
      "  FutureWarning\n"
     ]
    }
   ],
   "source": [
    "from pandas import read_csv\n",
    "from sklearn.model_selection import KFold\n",
    "from sklearn.model_selection import cross_val_score\n",
    "from sklearn.linear_model import LinearRegression\n",
    "filename = 'housing.csv'\n",
    "# names = ['CRIM','ZN','INDUS','CHAS','NOX',\"RM\",'AGE','DIS','RAD','TAX','PTRATIO','B','LSTAT','MEDV']\n",
    "dataframe = read_csv(filename)#, delim_whitespace = True, names = names)\n",
    "dataframe = dataframe.fillna(0)\n",
    "array = dataframe.values\n",
    "X = array[:,0:8]\n",
    "Y = array[:,8]\n",
    "kfold = KFold(n_splits=10, random_state = 7)\n",
    "model = LinearRegression()\n",
    "scoring = 'neg_mean_absolute_error'\n",
    "results = cross_val_score(model,X,Y,cv = kfold, scoring = scoring)\n",
    "print(results.mean(),results.std())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 63,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Mean squared error"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 64,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "-5122122535.00954 1758653357.065657\n"
     ]
    }
   ],
   "source": [
    "scoring = 'neg_mean_squared_error'\n",
    "results = cross_val_score(model, X,Y, cv=kfold, scoring = scoring)\n",
    "print(results.mean(),results.std())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "metadata": {},
   "outputs": [],
   "source": [
    "# R squared metric"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 67,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0.5438370342516761 0.05898949207468777\n"
     ]
    }
   ],
   "source": [
    "scoring = 'r2'\n",
    "results = cross_val_score(model, X, Y, cv = kfold, scoring = scoring)\n",
    "print(results.mean(), results.std())"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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