NAMESPACE

# Generated by roxygen2: do not edit by hand

export(PCA)
export(Rphenograph)
export(add.confounder.variables)
export(assess.cluster.similarity)
export(cell.cycle.score)
export(cluster.analysis)
export(controlled.mean.score)
export(download_LCMV)
export(filter_cluster_data)
export(find_neighbors)
export(get.cluster.names)
export(get.robust.cluster.similarity)
export(get.robust.markers)
export(get.variable.genes)
export(initialize.project)
export(mitochondrial.score)
export(plot_contour_overlay_tSNE)
export(plot_pair_scatter)
export(plot_simple_heatmap)
export(read.data)
export(read.preclustered.datasets)
export(ribosomal.score)
export(set.cluster.names)
export(setup_LCMV_example)
export(setup_pooled_env)
export(summarize)
export(visualize.cluster.cors.heatmaps)
export(visualize.cluster.similarity.stats)
import(GGally)
import(RColorBrewer)
import(cccd)
import(dplyr)
import(ggplot2)
import(ggpubr)
import(ggrepel)
import(gplots)
import(reshape2)
import(rslurm)
importFrom(RANN,nn2)
importFrom(Rcpp,sourceCpp)
importFrom(graphics,plot)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph.data.frame)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(stats,quantile)
importFrom(stats,rnorm)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,write.csv)
useDynLib(robustSingleCell)