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Hi,
First of all, thanks for the great interface to access and download JASPAR TF motif profiles!
I am particularly interested in one TF (NRF1) that I am not able to retrieve with pyJASPAR using 'species' argument like this:
jdb_obj.fetch_motifs(collection="CORE", species=["9606"])
It can be retrieved by downloading TFs for taxonomic group, i.e. 'Vertebrates':
motifs = jdb_obj.fetch_motifs( ... collection = ['CORE'], ... tax_group = ['Vertebrates'], ... all_versions = False)
However, then there is a mix of human and non-human TF motifs, and I need purely human TF motifs.
It is possible to fetch it by id:
jdb_obj.fetch_motif_by_id('MA0506.1')
Is there any workaround to get all human TF motifs including NRF1 in one function call or do I do anything wrong when fetching the motifs?
Kind regards, Ian
The text was updated successfully, but these errors were encountered:
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Hi,
First of all, thanks for the great interface to access and download JASPAR TF motif profiles!
I am particularly interested in one TF (NRF1) that I am not able to retrieve with pyJASPAR using 'species' argument like this:
It can be retrieved by downloading TFs for taxonomic group, i.e. 'Vertebrates':
However, then there is a mix of human and non-human TF motifs, and I need purely human TF motifs.
It is possible to fetch it by id:
Is there any workaround to get all human TF motifs including NRF1 in one function call or do I do anything wrong when fetching the motifs?
Kind regards,
Ian
The text was updated successfully, but these errors were encountered: