Add template to use and compare prior records from file #433
Workflow file for this run
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| name: test-suite | |
| on: [push, pull_request] | |
| jobs: | |
| test-template-and-lint: | |
| strategy: | |
| matrix: | |
| os: [windows-latest, ubuntu-latest] | |
| python-version: ['3.8', '3.12'] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: 'x64' | |
| - name: Cache Python packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ${{ runner.os == 'Windows' && 'C:\users\runneradmin\appdata\local\pip\cache' || '~/.cache/pip' }} | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| pip install . ruff scitree asreview-datatools asreview-insights synergy-dataset | |
| - name: Lint python with ruff | |
| run: | | |
| ruff check . | |
| - name: Create directories using Python | |
| run: python -c "import os; [os.makedirs(path, exist_ok=True) for path in ['./tmp/basic/data-test', './tmp/arfi/data', './tmp/prior/data', './tmp/multimodel/data', './tmp/scripts', './tmp/synergy/data']]" | |
| - name: set up environment | |
| run: | | |
| cp .github/workflows/test_data/labels.csv ./tmp/basic/data-test/labels.csv | |
| cp .github/workflows/test_data/labels.csv ./tmp/arfi/data/labels.csv | |
| cp .github/workflows/test_data/labels.csv ./tmp/prior/data/labels.csv | |
| cp .github/workflows/test_data/labels.csv ./tmp/prior/data/prior_labels.csv | |
| cp .github/workflows/test_data/labels.csv ./tmp/multimodel/data/labels.csv | |
| - name: Render makita templates | |
| run: | | |
| cd tmp/basic | |
| asreview makita template basic --classifier nb --feature_extractor tfidf --query_strategy max --n_runs 1 -s data-test -o output-test --init_seed 1 --model_seed 2 --skip_wordclouds --overwrite --instances_per_query 2 --stop_if min --balance_strategy double | tee output.txt | |
| grep -q "ERROR" output.txt && exit 1 || true | |
| cd ../arfi | |
| asreview makita template arfi | tee output.txt | |
| grep -q "ERROR" output.txt && exit 1 || true | |
| cd ../prior | |
| asreview makita template prior | tee output.txt | |
| grep -q "ERROR" output.txt && exit 1 || true | |
| cd ../multimodel | |
| asreview makita template multimodel | tee output.txt | |
| grep -q "ERROR" output.txt && exit 1 || true | |
| - name: Render makita scripts | |
| run: | | |
| asreview makita add-script --all -o ./tmp/scripts | tee output.txt | |
| grep -q "ERROR" output.txt && exit 1 || true | |
| - name: Run SciTree | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: | | |
| cd ./tmp/ | |
| scitree | |
| - name: Execute basic template jobs file | |
| if: ${{ matrix.os != 'windows-latest' }} | |
| run: | | |
| cd tmp/synergy | |
| synergy_dataset get -d van_de_Schoot_2018 -o ./data -l | |
| asreview makita template basic --instances_per_query 100 --skip_wordclouds --overwrite --n_runs 2 | |
| sh jobs.sh | |
| scitree |